hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06675/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1582  ( 1362 res)   mbg06675

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UBA      UBA/TS-N domain                                 35.2    1.5e-06   1
RRM_1    RNA recognition motif. (a.k.a. RRM, RBD, or     19.2     0.0016   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UBA        1/1     606   645 ..     1    45 []    35.2  1.5e-06
RRM_1      1/1    1188  1253 ..     1    74 []    19.2   0.0016

Alignments of top-scoring domains:
UBA: domain 1 of 1, from 606 to 645: score 35.2, E = 1.5e-06
                   *->ideelvkqLreMGGGvfsreeakkALratnnnsDverAvewLleh<-
                      i   l+kqL +MG   f+re a++AL+ + +n  +++A+  Lle+  
   mKIAA1582   606    IMSRLIKQLTDMG---FPREPAEEALKSNSMN--LDQAMSALLEK   645  

                   *
                    
   mKIAA1582     -   -    

RRM_1: domain 1 of 1, from 1188 to 1253: score 19.2, E = 0.0016
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l  +NL+p ++ + L++l  ++Gp + + +          + G a V
   mKIAA1582  1188    LVLRNLTPQIDGSTLRTLCLQHGPLITFHLNL--------TQGNAVV 1226 

                   eFedeedAekAldalnGkelggrelrv<-*
                   ++ ++e+A+kA ++l+   lg+ ++     
   mKIAA1582  1227 RYSSKEEAAKAQKSLHMCVLGNTTILA    1253 

//