hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbf/mbf00310/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1580 ( 640 res) mbf00310 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_TYP Leucine-rich repeats, typical (most populate 122.2 5.9e-32 8 IG Immunoglobulin 58.3 9.8e-13 1 LRR_PS Leucine-rich repeat, plant-specific subfamil 40.7 1.9e-07 6 IGc2 Immunoglobulin C-2 Type 40.2 2.8e-07 1 LRRNT Leucine rich repeat N-terminal domain 27.6 0.0017 1 IGv Immunoglobulin V-Type 26.9 0.0028 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRRNT 1/1 46 80 .. 1 38 [] 27.6 0.0017 LRR_TYP 1/8 79 98 .. 1 24 [] 2.1 2.3e+02 LRR_PS 1/6 99 121 .. 1 24 [] 5.2 2.6e+02 LRR_TYP 2/8 99 122 .. 1 24 [] 28.6 0.00084 LRR_PS 2/6 123 145 .. 1 24 [] 11.7 36 LRR_TYP 3/8 123 146 .. 1 24 [] 21.5 0.12 LRR_PS 3/6 147 169 .. 1 24 [] 11.9 34 LRR_TYP 4/8 147 170 .. 1 24 [] 27.7 0.0016 LRR_TYP 5/8 196 217 .. 1 24 [] 5.3 93 LRR_PS 4/6 196 217 .. 1 24 [] 4.3 3.3e+02 LRR_PS 5/6 218 240 .. 1 24 [] 9.6 68 LRR_TYP 6/8 218 241 .. 1 24 [] 30.4 0.00025 LRR_TYP 7/8 242 265 .. 1 24 [] 5.8 82 LRR_PS 6/6 266 288 .. 1 24 [] 17.5 1.8 LRR_TYP 8/8 266 289 .. 1 24 [] 23.5 0.029 IGv 1/1 370 428 .. 1 76 [] 26.9 0.0028 IGc2 1/1 366 433 .. 1 56 [] 40.2 2.8e-07 IG 1/1 360 444 .. 1 58 [] 58.3 9.8e-13 Alignments of top-scoring domains: LRRNT: domain 1 of 1, from 46 to 80: score 27.6, E = 0.0017 *->qCPapCtCspdfgtaVdCsgrgLttlevPldlPadttl<-* CP C Cs + + V C +++L+ evP +++ +t+l mKIAA1580 46 TCPSVCSCS-NQFSKVICVRKNLR--EVPDGISTNTRL 80 LRR_TYP: domain 1 of 8, from 79 to 98: score 2.1, E = 2.3e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* r L+L+ Nq++ + + F + mKIAA1580 79 ----RLLNLHENQIQIIKVNSFKH 98 LRR_PS: domain 1 of 6, from 99 to 121: score 5.2, E = 2.6e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L++L Ls N++ +I +n mKIAA1580 99 LRHLEILQLSRNHIR-TIEIGAFN 121 LRR_TYP: domain 2 of 8, from 99 to 122: score 28.6, E = 0.00084 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L+ L Ls+N+++++ gaF+g mKIAA1580 99 LRHLEILQLSRNHIRTIEIGAFNG 122 LRR_PS: domain 2 of 6, from 123 to 145: score 11.7, E = 36 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L++L+L +N+L+ +IP + mKIAA1580 123 LANLNTLELFDNRLT-TIPNGAFV 145 LRR_TYP: domain 3 of 8, from 123 to 146: score 21.5, E = 0.12 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL +L L +N+Lt++P+gaF mKIAA1580 123 LANLNTLELFDNRLTTIPNGAFVY 146 LRR_PS: domain 3 of 6, from 147 to 169: score 11.9, E = 34 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L++L L nN + +IPs +n mKIAA1580 147 LSKLKELWLRNNPIE-SIPSYAFN 169 LRR_TYP: domain 4 of 8, from 147 to 170: score 27.7, E = 0.0016 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L+eL L nN ++s+P+ aF+ mKIAA1580 147 LSKLKELWLRNNPIESIPSYAFNR 170 LRR_TYP: domain 5 of 8, from 196 to 217: score 5.3, E = 93 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nLr L+L +L+++P+ + + mKIAA1580 196 LSNLRYLNLAMCNLREIPNLT--P 217 LRR_PS: domain 4 of 6, from 196 to 217: score 4.3, E = 3.3e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L++L++L+L+ +nL eIP l mKIAA1580 196 LSNLRYLNLAMCNLR-EIPN-LTP 217 [output cut off at A = 10 top alignments] //