hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh04134/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1576 ( 442 res) mbh04134 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ADH_N Alcohol dehydrogenase GroES-like domain 87.7 2.3e-22 1 ADH_zinc_N Zinc-binding dehydrogenase 47.0 4.2e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ADH_N 1/1 91 172 .. 1 115 [] 87.7 2.3e-22 ADH_zinc_N 1/1 203 359 .. 1 150 [] 47.0 4.2e-10 Alignments of top-scoring domains: ADH_N: domain 1 of 1, from 91 to 172: score 87.7, E = 2.3e-22 *->pgeVlvkvkaaGiCgsDlhiykGgeqppvklPlilGHEgaGiVeevG +ge ++vka+G++ Dl +++G p+k Pl++G E +GiVe++G mKIAA1576 91 DGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALG 137 pgVtgddglkvGDrVvveplipCGkCeyCreGrenlCpngkflGvdgrdG ++V+g + +GDrV++ f ++ mKIAA1576 138 DSVKG---YEIGDRVMA------------------------FVNYN---- 156 gfAEYvvvPdaarnlvpl<-* ++AE v+ P ++++++ mKIAA1576 157 AWAEVVCTP--VEFVYKI 172 ADH_zinc_N: domain 1 of 1, from 203 to 359: score 47.0, E = 4.2e-10 *->pGdtVlVhGaGGGvGlaAvqlAkalGAkarViavdgseeklelAkel +G +VlVh aGGGvG+a++ql+ + + + s +k+e+ k mKIAA1576 203 EGMSVLVHSAGGGVGQAVAQLCSTVP--NVTVFGTASTFKHEAIKDS 247 GAdhvinsreedsgamKgqrdeaedvverirelTgGGvDvvidcvGapat ++h ++ + v++++++ +GvD+v+dc + ++ mKIAA1576 248 -VTHLFDRNAD--------------YVQEVKRISAEGVDIVLDCLC-GDN 281 leqalellrpgGrvvvvGl.....................vpfplrdlll +l+ll+p G++++ G ++ ++++++ + ++ + ++++ +l mKIAA1576 282 TGKGLSLLKPLGTYILYGSsnmvtgetksffsfakswwqvEKVNPIKLYE 331 keltilGslvgg....eefeealellas<-* ++ i G+ + + ++ +++ +++ mKIAA1576 332 ENKVIAGFSLLNllfkQGRSGLIRGVVE 359 //