hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph02104/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1573  ( 857 res)   mph02104

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Cache_1  Cache domain                                    41.0    2.6e-08   1
VWA      von Willebrand factor type A domain              2.7     0.0085   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VWA        1/1     183   378 ..     1   195 []     2.7   0.0085
Cache_1    1/1     408   487 ..     1    92 []    41.0  2.6e-08

Alignments of top-scoring domains:
VWA: domain 1 of 1, from 183 to 378: score 2.7, E = 0.0085
                   *->DivFllDgSgSigeenlFekvkdFvkklveknldigpdgtrVglvqY
                       iv +lD   S+++ + ++ +kd++  +++       +++ +++++ 
   mKIAA1573   183    HIVVILDHGASVTDTQ-LQIAKDAAQVILS----AIDEHDKISVLTV 224  

                   ssdvr.........tefsLndysskddllaavlknlrylgGgTnNtgkAL
                   ++ vr+ + ++  +t+ s  +  +k +++  v   ++++   T   + ++
   mKIAA1573   225 ADAVRtcsldqcykTYLSPATSETKRKMSTFV-SSVKPSDSPTQ-HAVGF 272  

                   kyalenlfsstMikrnrsagsRp.enapkvlillTDGksndggdve.aaa
                     a +++ s+       s+  R + n   v+i l+ G  + ++++e++ a
   mKIAA1573   273 HRAFQLIRST-------SNSTRFqANTDMVIIYLSAGITSKDSSEEdKKA 315  

                   alrdkk..........kgvgitvfavGvGgdvdeaeLr.iasepeseghv
                    lr  +++++  +++ + +  ++   Gv+g    a+Lr++a   e ++  
   mKIAA1573   316 TLRVINeengflnnsvMILTYALMNDGVTGLKELAFLRdLA---EQNSGK 362  

                   fyvedfdalwlelqdiqeql<-*
                   + ++d  a  l+   i   +   
   mKIAA1573   363 YGIPDRTA--LP--VIKGSM    378  

Cache_1: domain 1 of 1, from 408 to 487: score 41.0, E = 2.6e-08
                   *->wTePYvdaastgdmViTvsvPvydrtneqrnktndngdllGVvgiDv
                      ++ P+ d+  +++++ Tvs+P y             + llG vg+Dv
   mKIAA1573   408    FSLPFSDEM-GDGLIMTVSKPCYF-----------GNLLLGIVGVDV 442  

                   pledLlkltksiklGktGYaFivdnnGkvlaHPnlrpvtkllkdw<-*
                   +l  +l+++  ++   + Y F++d +G++l HP l  ++ l++ +   
   mKIAA1573   443 NLAYILEDVTYYQDSLASYTFLIDDKGYTLMHPSLTRPYLLSEPP    487  

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