hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj40003/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1572  ( 463 res)   mfj40003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     85.5    6.5e-21   4
BTB      Broad-Complex, Tramtrack and Bric a brac        55.3    8.1e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      56   150 ..     1   114 []    55.3  8.1e-12
ZnF_C2H2   1/4     296   318 ..     1    23 []    23.4    0.031
ZnF_C2H2   2/4     321   343 ..     1    23 []    30.1   0.0003
ZnF_C2H2   3/4     349   371 ..     1    23 []    28.9  0.00069
ZnF_C2H2   4/4     377   400 ..     1    23 []    26.1   0.0047

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 56 to 150: score 55.3, E = 8.1e-12
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvt+++++         ++++   Hk v aa    Sp++++ f+ +
   mKIAA1572    56    CDVTVLIDD---------VEVQG--HKIVFAAG---SPFLRDQFLLn 88   

                   ......ieldDeallievspeaFralLnflYt.kldlpeedvenveelLe
                   ++++ +i +         s e+ r lL  +Y++ l++pe   +++  +L 
   mKIAA1572    89 dsrevkISILQ-------SSEVGRQLLLSCYSgVLEFPE---MELVNYLT 128  

                   lAdfldSYGqip.lvelCeefllknl<-*
                   +A+fl    q+ ++ve C+++l+k++   
   mKIAA1572   129 AASFL----QMShIVERCTQALWKFI    150  

ZnF_C2H2: domain 1 of 4, from 296 to 318: score 23.4, E = 0.031
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp+ C ++f++ +++ +H+++H   
   mKIAA1572   296    HQCPK-CTRVFRHLeNYANHLKMH    318  

ZnF_C2H2: domain 2 of 4, from 321 to 343: score 30.1, E = 0.0003
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C + Cgk+f++k++L rHmrvH   
   mKIAA1572   321    FMCLL-CGKTFTQKgNLHRHMRVH    343  

ZnF_C2H2: domain 3 of 4, from 349 to 371: score 28.9, E = 0.00069
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C+i Cgk+fs+k +L+ H+  H   
   mKIAA1572   349    FQCKI-CGKTFSQKcSLQDHLNLH    371  

ZnF_C2H2: domain 4 of 4, from 377 to 400: score 26.1, E = 0.0047
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC++ C+++f +k+ L++H+++ H   
   mKIAA1572   377    HKCNY-CDMVFAHKpVLRKHLKqLH    400  

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