hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj40003/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1572  ( 463 res)   mfj40003

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          95.5      1e-24   4
BTB      BTB/POZ domain                                  77.3    3.2e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      46   150 ..     1   135 []    77.3  3.2e-19
zf-C2H2    1/4     296   318 ..     1    24 []    26.9  0.00048
zf-C2H2    2/4     321   343 ..     1    24 []    36.3  7.1e-07
zf-C2H2    3/4     349   371 ..     1    24 []    31.9  1.5e-05
zf-C2H2    4/4     377   400 ..     1    24 []    23.7   0.0043

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 46 to 150: score 77.3, E = 3.2e-19
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      +n+lre+ ++cDVt++++d        +++  HK v aa Sp+ ++ 
   mKIAA1572    46    MNKLREENKFCDVTVLIDD--------VEVQGHKIVFAAGSPFLRDQ 84   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F+ +       + ++v   i     s+e+ ++lL  +Y+g l+++     
   mKIAA1572    85 FLLN-------DSREVK--IS-ILQSSEVGRQLLLSCYSGVLEFP----- 119  

                   PssckseenvedlLalAadllqipslvdkCeefliksl<-*
                         e  ++++L +A ++lq+ ++v+ C++ l k +   
   mKIAA1572   120 ------EMELVNYLTAA-SFLQMSHIVERCTQALWKFI    150  

zf-C2H2: domain 1 of 4, from 296 to 318: score 26.9, E = 0.00048
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++Cp +C ++F++ +n+ +Hl++H   
   mKIAA1572   296    HQCP-KCTRVFRHLENYANHLKMH    318  

zf-C2H2: domain 2 of 4, from 321 to 343: score 36.3, E = 7.1e-07
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C   Cgk+F++k+nL+rH+r+H   
   mKIAA1572   321    FMCL-LCGKTFTQKGNLHRHMRVH    343  

zf-C2H2: domain 3 of 4, from 349 to 371: score 31.9, E = 1.5e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+ +Cgk+Fs+k +L+ Hl+ H   
   mKIAA1572   349    FQCK-ICGKTFSQKCSLQDHLNLH    371  

zf-C2H2: domain 4 of 4, from 377 to 400: score 23.7, E = 0.0043
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kC+ +C+ +F +k  L++Hl+  H   
   mKIAA1572   377    HKCN-YCDMVFAHKPVLRKHLKQlH    400  

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