hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15046/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1568  ( 792 res)   mbg15046

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FN3      Fibronectin type 3 domain                       51.0    1.5e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FN3        1/1      62   149 ..     1    69 []    51.0  1.5e-10

Alignments of top-scoring domains:
FN3: domain 1 of 1, from 62 to 149: score 51.0, E = 1.5e-10
                   *->PgpPsnptelrvtdvtststsdltsvtlsWepP........ivgYr.
                      P++P+ +  ++v  v+s+++   ts+++sW+pP+ ++ ++ i +Y+ 
   mKIAA1568    62    PSAPPQS--VTVLTVGSHNS---TSISVSWDPPpadhqngiIQEYKi 103  

                   .....................ytltgLkPgaepwteYefrVrAvngndaG
                   +  +++++   +++++   +++++ gL Pg     +Y++ V+A ++  aG
   mKIAA1568   104 wclgnetrfhinktvdaairsVVIGGLFPG----IQYRVEVAASTS--AG 147  

                   eg<-*
                    g   
   mKIAA1568   148 VG    149  

//