hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15046/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1568  ( 792 res)   mbg15046

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
fn3      Fibronectin type III domain                     61.6    1.6e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
fn3        1/1      62   152 ..     1    84 []    61.6  1.6e-14

Alignments of top-scoring domains:
fn3: domain 1 of 1, from 62 to 152: score 61.6, E = 1.6e-14
                   *->PsaP.tnltvtdv...tstsltlsWsppt...gngpitgYevtyRqp
                      PsaP++ +tv  v++++sts+++sW+pp+ ++ ng i+ Y++ + + 
   mKIAA1568    62    PSAPpQSVTVLTVgshNSTSISVSWDPPPadhQNGIIQEYKI-W-CL 106  

                   kngge.wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-*
                    n+     ++tv+   +s+++ gL Pg +Y v V+A + +G G  S   
   mKIAA1568   107 GNETRfHINKTVDAAIRSVVIGGLFPGIQYRVEVAASTSAGvGVKS    152  

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