hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh04633/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1564  ( 868 res)   mbh04633

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TCH      Associated with TFs and helicases              103.9    3.2e-27   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TCH        1/2     611   655 ..     1    50 []    79.5  7.1e-20
TCH        2/2     667   707 ..     1    50 []    25.9  0.00097

Alignments of top-scoring domains:
TCH: domain 1 of 2, from 611 to 655: score 79.5, E = 7.1e-20
                   *->dgeeRVpVinkktGkkLtGddAPkakdLerWLeenPgyvvDlgevaP
                      d e+R+pVink +G++L+Gd+AP++ +Le+WL+++P++     +v+P
   mKIAA1564   611    DLETRIPVINKVDGTLLVGDEAPRRAELEMWLQGHPEF-----AVDP 652  

                   rst<-*
                   r++   
   mKIAA1564   653 RFL    655  

TCH: domain 2 of 2, from 667 to 707: score 25.9, E = 0.00097
                   *->dgeeRVpVinkktGkkLtGddAPkakdLerWLeenPgyvvDlgevaP
                       g+e+V+ +n+++Gkk+    +  ++ ++r+L++++++     e ++
   mKIAA1564   667    LGMEPVQPANSRNGKKG----HYAETAFNRVLPGPVAP-----ENSK 704  

                   rst<-*
                   ++    
   mKIAA1564   705 KRV    707  

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