hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg00767/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1563 ( 1652 res) mbg00767 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- MORN MORN repeat 137.4 2.6e-37 8 VPS9 Vacuolar sorting protein 9 (VPS9) domain 44.9 1.8e-09 1 RCC1 Regulator of chromosome condensation (RCC1) 40.2 4.6e-08 4 RhoGEF RhoGEF domain -47.8 0.21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RCC1 1/4 110 166 .. 1 68 [] 5.6 1.2 RCC1 2/4 169 217 .. 1 68 [] 14.1 0.14 RCC1 3/4 522 569 .. 1 68 [] 12.8 0.19 RCC1 4/4 574 620 .. 1 68 [] 14.3 0.13 RhoGEF 1/1 689 879 .. 1 207 [] -47.8 0.21 MORN 1/8 1044 1066 .. 1 23 [] 36.0 8.8e-07 MORN 2/8 1067 1089 .. 1 23 [] 20.7 0.035 MORN 3/8 1095 1117 .. 1 23 [] 36.7 5.2e-07 MORN 4/8 1118 1140 .. 1 23 [] 15.5 0.27 MORN 5/8 1146 1168 .. 1 23 [] 15.1 0.31 MORN 6/8 1170 1192 .. 1 23 [] 8.4 3 MORN 7/8 1193 1215 .. 1 23 [] 19.9 0.058 MORN 8/8 1216 1239 .. 1 23 [] 9.8 1.8 VPS9 1/1 1547 1651 .. 1 120 [] 44.9 1.8e-09 Alignments of top-scoring domains: RCC1: domain 1 of 4, from 110 to 166: score 5.6, E = 1.2 *->dGrVYslGcFRgenGq..LGlgeeveeskGGRqGLERLlvPvlvmLK +G VY +G + Gq + v e +Pv + mKIAA1563 110 SGVVYMWGE--NAAGQcaVANQQYVPEP-----------SPVSISDS 143 srssslsekVvsvasGgqHtval<-* +s sl ++ ++ a+G Ht al mKIAA1563 144 ETSPSLAVRILQLACGEEHTLAL 166 RCC1: domain 2 of 4, from 169 to 217: score 14.1, E = 0.14 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr + + ++G qLGl ++ + +P++v mKIAA1563 169 SREIWAWGT----GCQLGLITTTFPVT----------KPQKV----- 196 ssslsekVvsvasGgqHtval<-* ++V++va+G+ H al mKIAA1563 197 EHLAGRVVLQVACGAFHSLAL 217 RCC1: domain 3 of 4, from 522 to 569: score 12.8, E = 0.19 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr V ++G g +GqLG g + P +v mKIAA1563 522 --EVWTWGK--GKEGQLGHGDVLPRL-----------QPLCV----- 548 ssslsekVvsvasGgqHtval<-* + V ++Gg+H al mKIAA1563 549 KCLDGKEVIHLEAGGSHSLAL 569 RCC1: domain 4 of 4, from 574 to 620: score 14.3, E = 0.13 *->dGrVYslGcFRgenGqLGlgeeveeskGGRqGLERLlvPvlvmLKsr +VYs+G+ ++ GqLG +++ vP l mKIAA1563 574 --QVYSWGS--NTFGQLG--HSEFPTT----------VPRLS----- 599 ssslsekVvsvasGgqHtval<-* + s V+sva+G ++ l mKIAA1563 600 KVSSENGVWSVAAGQDYSLFL 620 RhoGEF: domain 1 of 1, from 689 to 879: score -47.8, E = 0.21 *->vlkElleTEkkYvrdLeildnvymkpLreaaiss..kpvltpddiet l El TE+ +++ L + ++pL+ + + v +++ + mKIAA1563 689 SLHELASTERRFYSKLSEIKSQILRPLLSLENLGtvTTVQLLQEVAS 735 iFsNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlk Fs+++ ++ h + L+s L ++s + +k mKIAA1563 736 RFSKLCYLIGQHGASLSSYLQGMKEAS-----------------SLVIMK 768 lkepflqvYgeYcsnkpyA.....qelleklrqaasnpqFaefldeveas + + fl+ Y+eYc++ ++ ++++ll+k ++++ +++ + ++ mKIAA1563 769 HSSLFLDSYTEYCTSVSNFlvmggFQLLAK----PAIDFLNKNQELLQDL 814 sntgAkddavklt..LqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdr s + d+ + l + L L P+ R+ Y +L L++ t + +p++ mKIAA1563 815 SEVN--DENTQLMeiLNMLFFLPIRRLHNYAKVL--LKLATCFEVTSPEY 860 edLkkaldllqdlaksiNe<-* + L+++ ++ + la ++ + mKIAA1563 861 QKLQDSSSCYESLALHLGK 879 MORN: domain 1 of 8, from 1044 to 1066: score 36.0, E = 8.8e-07 *->YeGewknGkrhGkGvytwadGdr<-* Y+G w Gk+hG+Gv++w+dG + mKIAA1563 1044 YDGRWLSGKPHGRGVLKWPDGKM 1066 MORN: domain 2 of 8, from 1067 to 1089: score 20.7, E = 0.035 *->YeGewknGkrhGkGvytwadGdr<-* Y G ++nG+ +G+G y+ ++ mKIAA1563 1067 YSGMFRNGLEDGYGEYRIPNKAL 1089 MORN: domain 3 of 8, from 1095 to 1117: score 36.7, E = 5.2e-07 *->YeGewknGkrhGkGvytwadGdr<-* Y+G+wk+Gk++G+Gvy++a+G + mKIAA1563 1095 YVGHWKEGKMCGQGVYSYASGEV 1117 MORN: domain 4 of 8, from 1118 to 1140: score 15.5, E = 0.27 *->YeGewknGkrhGkGvytwadGdr<-* +eG +++++rhG+G ++ ++ mKIAA1563 1118 FEGCFQDNMRHGHGLLRSGKLTS 1140 MORN: domain 5 of 8, from 1146 to 1168: score 15.1, E = 0.31 *->YeGewknGkrhGkGvytwadGdr<-* + G+w+ +k+ G+Gv+ + + mKIAA1563 1146 FIGQWVMDKKAGYGVFDDITRGE 1168 MORN: domain 6 of 8, from 1170 to 1192: score 8.4, E = 3 *->YeGewknGkrhGkGvytwadGdr<-* Y G w+++ ++G Gv + G + mKIAA1563 1170 YMGMWQDDVCQGNGVVVTQFGLY 1192 MORN: domain 7 of 8, from 1193 to 1215: score 19.9, E = 0.058 *->YeGewknGkrhGkGvytwadGdr<-* YeG+++ +k+ G Gv+ d + mKIAA1563 1193 YEGNFHLNKMMGNGVLLSEDDTI 1215 MORN: domain 8 of 8, from 1216 to 1239: score 9.8, E = 1.8 *->YeGewknGk.rhGkGvytwadGdr<-* YeGe++++ + +GkG++t + Gd+ mKIAA1563 1216 YEGEFSDDWtLSGKGTLTMPHGDY 1239 VPS9: domain 1 of 1, from 1547 to 1651: score 44.9, E = 1.8e-09 *->veeakqeLrelqYeyySPrdKlqcllrccklIfnalknakgeneaPT + +a++ L +++ +++P+dKl+++++ + I + +++a+ + mKIAA1563 1547 FASAVECLQQIS-TTFTPSDKLKVIQQTFEEI-SQSVLASLQEDF-- 1589 DPmCGYRGepsADdfLPlLiYvilkanpphLlsnieYisrFlnpPisrlL + s Dd+ P++ Yv+l+a+ + L+s++ +i+++ +p l mKIAA1563 1590 --------LWSMDDLFPVFLYVVLRARIRNLGSEVHLIEDLMDP--F-LQ 1628 sGEegYYLTsLeaAlaFIkslde<-* +GE+g +T+L+a + I + mKIAA1563 1629 HGEQGIMFTTLKACYFQIQREKL 1651 //