hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj24085/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1562  ( 1135 res)   mfj24085

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CA       Cadherin repeats.                              387.7     7e-112   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CA         1/6      52   136 ..     1   121 []    10.7     0.21
CA         2/6     160   245 ..     1   121 []    81.8  8.3e-20
CA         3/6     269   353 ..     1   121 []    90.2  2.4e-22
CA         4/6     383   464 ..     1   121 []    97.9  1.2e-24
CA         5/6     488   575 ..     1   121 []    99.1  5.2e-25
CA         6/6     604   685 ..     1   121 []    21.7    0.018

Alignments of top-scoring domains:
CA: domain 1 of 6, from 52 to 136: score 10.7, E = 0.21
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v  + +  +   + +       v+++  ++++++l  ++++tG    
   mKIAA1562    52    VADVLLKLP---NPSA------VRFRAMPrgnspLLVVNENTG---- 85   

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +i++ + +DRE+ ++       ++ +  +e  D  + p++   
   mKIAA1562    86 -------EISIGAKIDREQLCQ-------KNLNCSIE-FDVLTLPTE--- 117  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             +     + v VlD+NDN P   
   mKIAA1562   118 ----------HLQLFHIEVDVLDINDNSP    136  

CA: domain 2 of 6, from 160 to 245: score 81.8, E = 8.3e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                       sA D+D g   eN+        tYs++ +++F I+ +t t g+   
   mKIAA1562   160    DSAFDPDVG---ENSL------HTYSLSAndYFNIEVRTRTDGAK-- 195  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     + +++++k+LDRE +         ++Y+L+ +A+D+G p+        
   mKIAA1562   196 --YAELIVVKELDRELK---------ASYELQLTASDMGVPQ-------- 226  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          +s+++ + + + D NDN P   
   mKIAA1562   227 -------RSGSSILKISISDSNDNSP    245  

CA: domain 3 of 6, from 269 to 353: score 90.2, E = 2.4e-22
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      ++AtD+D+g    Ng+      ++Ys++s+ +++  + F+Id+e G 
   mKIAA1562   269    LNATDPDEG---ANGR------IVYSFSShvspkiieTFKIDSEKG- 305  

                   ngpsLvkleiiittt.kpLDREeqflkreqtdeseYtLtveAtDgGgppp
                                t+ kp D+E +         ++Y++ v+A+D G+++ 
   mKIAA1562   306 -----------HLTLfKPVDYEIT---------KSYEIDVQAQDLGPNS- 334  

                   gdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                   +++ ++++V+DvNDN P   
   mKIAA1562   335 --------------IPAHCKIIIKVVDVNDNKP    353  

CA: domain 4 of 6, from 383 to 464: score 97.9, E = 1.2e-24
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      v++ D+Dsg    Ng+      + + + ++++F++ ++  +n++   
   mKIAA1562   383    VRVQDKDSG---LNGE------IICKLHGhgHFKLQKTYENNYL--- 417  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                        i t+++LDRE++         seY+Ltv+A D+G+p+        
   mKIAA1562   418 -----ILTNATLDREKR---------SEYSLTVIAEDKGTPS-------- 445  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          lss   +tv++ D+NDN+P   
   mKIAA1562   446 -------LSSVRHFTVQINDINDNPP    464  

CA: domain 5 of 6, from 488 to 575: score 99.1, E = 5.2e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      v+AtD+D g   eNg+      vtY+il++   +++ +++ +Idp++
   mKIAA1562   488    VTATDPDLG---ENGH------VTYTILEsfvlgssittYVTIDPSN 525  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G            i++++ +D+Ee          s+ t++veA+DgG++ 
   mKIAA1562   526 G-----------AIYALRIFDHEEV---------SQITFVVEARDGGSQK 555  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                 +lss++tv+ t++D+NDN P   
   mKIAA1562   556 --------------QLSSNTTVVLTIIDENDNVP    575  

CA: domain 6 of 6, from 604 to 685: score 21.7, E = 0.018
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      ++++D+Dsg    N++      +++si+s+++++ F +dp++     
   mKIAA1562   604    IRVVDRDSG---ANAE------FSCSIVSgneenIFIMDPRSC---- 637  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +i+t      E++          e  L v+ +D+G+pp     
   mKIAA1562   638 -------DIHT--NVSMESIPS-------TEWALSVIIQDKGSPP----- 666  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             l + + ++  V D  +      
   mKIAA1562   667 ----------LHTKVLLRCMVFDYAESVT    685  

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