hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp01052/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1559  ( 504 res)   mbp01052

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    241.3    8.3e-68  13
KRAB     krueppel associated box                         85.7    5.8e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      11    72 ..     1    62 []    85.7  5.8e-21
ZnF_C2H2   1/13    143   165 ..     1    23 []    27.5   0.0019
ZnF_C2H2   2/13    171   193 ..     1    23 []    24.6    0.013
ZnF_C2H2   3/13    199   221 ..     1    23 []    25.8   0.0062
ZnF_C2H2   4/13    227   249 ..     1    23 []    27.9   0.0014
ZnF_C2H2   5/13    255   277 ..     1    23 []    23.9    0.023
ZnF_C2H2   6/13    283   305 ..     1    23 []    24.7    0.013
ZnF_C2H2   7/13    311   333 ..     1    23 []    19.5     0.46
ZnF_C2H2   8/13    339   361 ..     1    23 []    30.8  0.00019
ZnF_C2H2   9/13    367   389 ..     1    23 []    25.1   0.0095
ZnF_C2H2  10/13    395   417 ..     1    23 []    25.9   0.0057
ZnF_C2H2  11/13    423   445 ..     1    23 []    20.7     0.21
ZnF_C2H2  12/13    451   473 ..     1    23 []    23.9    0.023
ZnF_C2H2  13/13    479   501 ..     1    23 []    24.7    0.013

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 11 to 72: score 85.7, E = 5.8e-21
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                      VtF DVAVdFsqEEWe LDpaQ+nLYRdVM+E+Ysn  SL++ +  k
   mKIAA1559    11    VTFGDVAVDFSQEEWEFLDPAQKNLYRDVMWETYSNFISLDLESRFK 57   

                   pdliskLEqgeEpwi<-*
                    d  s      E  +   
   mKIAA1559    58 TDTSSSDKGICEVYS    72   

ZnF_C2H2: domain 1 of 13, from 143 to 165: score 27.5, E = 0.0019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C k+f +++ L +H+r+H   
   mKIAA1559   143    YECKE-CRKTFIRRsTLSQHLRIH    165  

ZnF_C2H2: domain 2 of 13, from 171 to 193: score 24.6, E = 0.013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cg+ f+++ +L+rH + H   
   mKIAA1559   171    YKCKE-CGQPFRQRaHLIRHHKLH    193  

ZnF_C2H2: domain 3 of 13, from 199 to 221: score 25.8, E = 0.0062
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk f+  ++L++H+r H   
   mKIAA1559   199    YECKD-CGKAFTVLqELTQHQRLH    221  

ZnF_C2H2: domain 4 of 13, from 227 to 249: score 27.9, E = 0.0014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f+ +++L rH+r+H   
   mKIAA1559   227    YECKE-CGKAFRVHqQLARHQRIH    249  

ZnF_C2H2: domain 5 of 13, from 255 to 277: score 23.9, E = 0.023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f++ ++L+rH+r H   
   mKIAA1559   255    YECKE-CGKTFRQCtHLTRHQRLH    277  

ZnF_C2H2: domain 6 of 13, from 283 to 305: score 24.7, E = 0.013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk f   ++L+ H+++H   
   mKIAA1559   283    YECKE-CGKAFVCGpDLRVHQKIH    305  

ZnF_C2H2: domain 7 of 13, from 311 to 333: score 19.5, E = 0.46
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C+  Cgksf+  ++L+ H+ +H   
   mKIAA1559   311    YACKD-CGKSFRICqQLTVHQSIH    333  

ZnF_C2H2: domain 8 of 13, from 339 to 361: score 30.8, E = 0.00019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgk+f+ +++L+rH+r+H   
   mKIAA1559   339    YECKE-CGKTFRLRqQLVRHQRIH    361  

ZnF_C2H2: domain 9 of 13, from 367 to 389: score 25.1, E = 0.0095
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C + C k+fss+++L+ H+ +H   
   mKIAA1559   367    YECLE-CWKTFSSYsQLISHQSIH    389  

	[output cut off at A = 10 top alignments]
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