hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp01052/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1559  ( 504 res)   mbp01052

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         320.8    1.6e-92  13
KRAB     KRAB box                                       100.4    3.4e-26   1
zf-BED   BED zinc finger                                 10.9       0.22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      11    51 ..     1    41 []   100.4  3.4e-26
zf-C2H2    1/13    143   165 ..     1    24 []    33.6  4.5e-06
zf-BED     1/1     127   166 ..     1    52 []    10.9     0.22
zf-C2H2    2/13    171   193 ..     1    24 []    30.6  3.7e-05
zf-C2H2    3/13    199   221 ..     1    24 []    34.1  3.2e-06
zf-C2H2    4/13    227   249 ..     1    24 []    34.5  2.4e-06
zf-C2H2    5/13    255   277 ..     1    24 []    32.8    8e-06
zf-C2H2    6/13    283   305 ..     1    24 []    23.5   0.0051
zf-C2H2    7/13    311   333 ..     1    24 []    27.7  0.00027
zf-C2H2    8/13    339   361 ..     1    24 []    35.5  1.2e-06
zf-C2H2    9/13    367   389 ..     1    24 []    29.0  0.00011
zf-C2H2   10/13    395   417 ..     1    24 []    33.6  4.5e-06
zf-C2H2   11/13    423   445 ..     1    24 []    27.5  0.00032
zf-C2H2   12/13    451   473 ..     1    24 []    30.0  5.4e-05
zf-C2H2   13/13    479   501 ..     1    24 []    31.6  1.8e-05

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 11 to 51: score 100.4, E = 3.4e-26
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                      VtF DVAVdF+qEEW+ LdpaQ+nLYrdVM+E+y+n +Sl+   
   mKIAA1559    11    VTFGDVAVDFSQEEWEFLDPAQKNLYRDVMWETYSNFISLD    51   

zf-C2H2: domain 1 of 13, from 143 to 165: score 33.6, E = 4.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C k+F r+s+L +Hlr+H   
   mKIAA1559   143    YECK-ECRKTFIRRSTLSQHLRIH    165  

zf-BED: domain 1 of 1, from 127 to 166: score 10.9, E = 0.22
                   *->SkvWkhFtkveeeedgkevegkakCkhCgkklsrkkksGTsnLirHL
                      +   + + +v++ee+      + +Ck C+k++ r+     s+L  HL
   mKIAA1559   127    HSFLSEYQRVQNEEK------FYECKECRKTFIRR-----STLSQHL 162  

                   rrkHp<-*
                   r +H    
   mKIAA1559   163 R-IHT    166  

zf-C2H2: domain 2 of 13, from 171 to 193: score 30.6, E = 3.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +Cg+ F+++++L rH + H   
   mKIAA1559   171    YKCK-ECGQPFRQRAHLIRHHKLH    193  

zf-C2H2: domain 3 of 13, from 199 to 221: score 34.1, E = 3.2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ dCgk+F+   +L++H+r H   
   mKIAA1559   199    YECK-DCGKAFTVLQELTQHQRLH    221  

zf-C2H2: domain 4 of 13, from 227 to 249: score 34.5, E = 2.4e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+ + +L rH+r+H   
   mKIAA1559   227    YECK-ECGKAFRVHQQLARHQRIH    249  

zf-C2H2: domain 5 of 13, from 255 to 277: score 32.8, E = 8e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F++  +L+rH+r H   
   mKIAA1559   255    YECK-ECGKTFRQCTHLTRHQRLH    277  

zf-C2H2: domain 6 of 13, from 283 to 305: score 23.5, E = 0.0051
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F    +L+ H+++H   
   mKIAA1559   283    YECK-ECGKAFVCGPDLRVHQKIH    305  

zf-C2H2: domain 7 of 13, from 311 to 333: score 27.7, E = 0.00027
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ dCgksF+   +L+ H+ +H   
   mKIAA1559   311    YACK-DCGKSFRICQQLTVHQSIH    333  

zf-C2H2: domain 8 of 13, from 339 to 361: score 35.5, E = 1.2e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+ + +L rH+r+H   
   mKIAA1559   339    YECK-ECGKTFRLRQQLVRHQRIH    361  

zf-C2H2: domain 9 of 13, from 367 to 389: score 29.0, E = 0.00011
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C  +C k+Fs+ s+L +H+ +H   
   mKIAA1559   367    YECL-ECWKTFSSYSQLISHQSIH    389  

zf-C2H2: domain 10 of 13, from 395 to 417: score 33.6, E = 4.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +Cgk+F+  s+L++H+ +H   
   mKIAA1559   395    YECE-ECGKAFRLLSQLTQHQSIH    417  

zf-C2H2: domain 11 of 13, from 423 to 445: score 27.5, E = 0.00032
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ +C k F+  s+L++H+ +H   
   mKIAA1559   423    YECQ-ECRKPFRLLSQLTQHRSIH    445  

zf-C2H2: domain 12 of 13, from 451 to 473: score 30.0, E = 5.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y+C+ dCgk+F+  s L +H+r+H   
   mKIAA1559   451    YECK-DCGKAFRLYSFLSQHQRIH    473  

zf-C2H2: domain 13 of 13, from 479 to 501: score 31.6, E = 1.8e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+ +C+k+F+++s+L++H+++H   
   mKIAA1559   479    YKCK-ECKKAFRQHSHLTQHQKIH    501  

//