hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg17170/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1558  ( 502 res)   mbg17170

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAPS     SIT4 phosphatase-associated protein            572.1   3.6e-168   1
Clathrin Region in Clathrin and VPS                     -16.9        0.6   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Clathrin   1/1      65   200 ..     1   156 []   -16.9      0.6
SAPS       1/1     133   498 ..     1   629 []   572.1 3.6e-168

Alignments of top-scoring domains:
Clathrin: domain 1 of 1, from 65 to 200: score -16.9, E = 0.6
                   *->lielsdpidvselVeifekrglleeLipyLesalkensfseepalqn
                      +i+ ++p+d +e ++    ++++++  ++L s +++   ++++  ++
   mKIAA1558    65    FIIEEPPQDMDEKIR----YKYPNISCELLTSDVSQ---MNDRLGED 104  

                   lLieayiksdpqkemerlealaknlknnnyDiekvarlcekaklyFweeA
                   + +++ ++s  + e  ++        +    + kv  +++++k+   +  
   mKIAA1558   105 ESLLMKLYSFLLNESPLNP-------LLASFFSKVLSILISRKPE--QIV 145  

                   fllykkDlsnfkdaivtlielieagnyqravdyavkrnnpelwaevlkac
                    +l kk +++ +  i++   +    +++ +++ +  +  p     vl+++
   mKIAA1558   146 DFLKKK-RDFVDLIIKHIGTS---AIMDLLLRLLTCIEPPQPRQDVLNWL 191  

                   ldkkrflla<-*
                   ++++ ++ +   
   mKIAA1558   192 NEERIIQRL    200  

SAPS: domain 1 of 1, from 133 to 498: score 572.1, E = 3.6e-168
                   *->necLLdrktdqlleFlkskdnfVdklLkHIgtsaIECLMDlLLrlis
                        +L++rk++q+++Flk+k++fVd+++kHIgtsaI   MDlLLrl++
   mKIAA1558   133    LSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAI---MDLLLRLLT 176  

                   tiDkpesrytgvieWLyeqnLiekLvdlLrpseydpldvqsnaadfLCai
                   +i++p++r ++v++WL+e+ +i++Lv++++ps+ ++ d++sna+++LC+i
   mKIAA1558   177 CIEPPQPR-QDVLNWLNEERIIQRLVEIVHPSQ-EE-DRHSNASQSLCEI 223  

                   iriSrdKLYIMnskldiqssigPNeLtrqLvSpetieqLldimlVEEGCP
                   +r+Sr      +++l++q+s++P++L+++L+++e+ieqLl++++      
   mKIAA1558   224 VRLSR------DQMLQVQNSTEPDPLLATLEKQEIIEQLLSNIF------ 261  

                   AedeasPkggsaLvsgvsiiIeLirknnsdveYdtvnslrttLLQKeEie
                    ++e++   +sa+vs+++i+++L++++++++e+++  ++           
   mKIAA1558   262 -HKEKN---ESAIVSAIQILLTLLETRRPTFEGHIEICP----------- 296  

                   thLiEERHYSYGLmRPCldnPPteRdPqiylgellegfLaprLpdFlqTL
                                       P+++++++++++++le++ ++rL+ F++ L
   mKIAA1558   297 --------------------PGMSHSACSVNKSVLEAI-RGRLGSFHE-L 324  

                   LlkpeadgdklPLLeTtyGklePPLGfeRlKIcELIAeLLhcsnmallne
                   Ll+p+++++    + Tt+G l PP G++Rl + +LI++LL +++ +++ +
   mKIAA1558   325 LLEPPKKSV----MKTTWGILDPPVGNTRLNVIRLISSLLQTNTSSINGD 370  

                   prGEdIvreRDklRdklfehdqeaesnarievkededdnddtvednneed
                                                                     
   mKIAA1558     - -------------------------------------------------- -    

                   knnnedandsndeeerkdkikkkvkddnlvstkvdseeseaepvdeeeed
                                                                     
   mKIAA1558     - -------------------------------------------------- -    

                   akdeddedDdadesfEipydsesieeklRslPvVGDfLKInLidtgvipr
                                                            L+ ++ i  
   mKIAA1558   371 -----------------------------------------LMELNSIGV 379  

                   iLDlFFeYPWNNFLHnvVediiqqiLngpmdndyNastevtdyftesptd
                   iLD+FF+Y+WNNFLH++Ve +i++iL +p++n +N               
   mKIAA1558   380 ILDMFFKYTWNNFLHTQVEICIALILASPFENAEN--------------- 414  

                   qqeSeaTlnDldSppdsfLvkhLlqecdsdvfLiekIleaweecalagDs
                         T++D+dS++d+ L+khL+q+c+    Lie+Ileaw  +      
   mKIAA1558   415 -----GTITDQDSTGDNLLLKHLFQKCQ----LIERILEAWDTN------ 449  

                   isdfilpgnkdsvaksgkkglRlGYMGHLTrIAeevvkftelypesniqi
                               ++k++++g+R+GYMGHLTrIA+++v+ t+++p+s   +
   mKIAA1558   450 ------------EKKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSA-LV 486  

                   qqllklsslledeeWeeyvedvLaeTrekynv<-*
                   qql  +  +l                   +n+   
   mKIAA1558   487 QQL--IKGKLV------------------NNL    498  

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