hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mtj/mtj00168/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1555  ( 1068 res)   mtj00168

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     45.4    7.3e-09   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/2     440   462 ..     1    23 []    26.4    0.004
ZnF_C2H2   2/2     468   492 ..     1    23 []    26.5   0.0037

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 2, from 440 to 462: score 26.4, E = 0.004
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg +++ ++ Lk+H+r+H   
   mKIAA1555   440    YVCEE-CGIRCKKPsMLKKHIRTH    462  

ZnF_C2H2: domain 2 of 2, from 468 to 492: score 26.5, E = 0.0037
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      y+C++ C++ f++k++L++Hm+++ H   
   mKIAA1555   468    YVCKH-CHFAFKTKgNLTKHMKskAH    492  

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