hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00847/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1552  ( 485 res)   mbj00847

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FLYWCH   FLYWCH zinc finger domain                      338.0    1.1e-97   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FLYWCH     1/4      43   101 ..     1    69 []    81.7  1.5e-20
FLYWCH     2/4     210   268 ..     1    69 []    96.5  5.4e-25
FLYWCH     3/4     298   356 ..     1    69 []    91.3    2e-23
FLYWCH     4/4     389   447 ..     1    69 []    89.8  5.6e-23

Alignments of top-scoring domains:
FLYWCH: domain 1 of 4, from 43 to 101: score 81.7, E = 1.5e-20
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++  Gg++Lv++++lyk++k+++  +k+yW+C+   ++  +C++R
   mKIAA1552    43    FLKTCYGGTFLVHQSFLYKREKTVG--SKVYWTCR--EHAVHGCRSR 85   

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g       +++v+++H+H   
   mKIAA1552    86 AITQG------QRVTVMRSHCH    101  

FLYWCH: domain 2 of 4, from 210 to 268: score 96.5, E = 5.4e-25
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++++Gg +Lv++++ly+++k+++  +k+yW+C+  ++++++C++R
   mKIAA1552   210    FLKTPLGGNFLVYESFLYRREKVAG--EKVYWTCR--DQARMGCRSR 252  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g      r ++v+++H+H   
   mKIAA1552   253 AITQG------RQVTVMRSHCH    268  

FLYWCH: domain 3 of 4, from 298 to 356: score 91.3, E = 2e-23
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++++Gg++Lv++++ly+++k+ +  dk+yW+C+  ++++++C++R
   mKIAA1552   298    FLKTPLGGSFLVYESFLYRREKATG--DKVYWTCR--DQARMGCRSR 340  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g       ++ v++ H+H   
   mKIAA1552   341 AITQG------QRVMVMRRHCH    356  

FLYWCH: domain 4 of 4, from 389 to 447: score 89.8, E = 5.6e-23
                   *->fltsakGgelLvfdghlykfdkrsaesdkkyWrCikkrdrkntCkaR
                      fl++ +Gg++Lv++++ly+ +k+++  +k+yW C+  ++++ +C++R
   mKIAA1552   389    FLRTSLGGRFLVYESFLYRKEKAAG--EKVYWMCR--DQARLGCRSR 431  

                   iiTtgdedGairvirvngeHnH<-*
                   +iT+g      r++ v+++H+H   
   mKIAA1552   432 AITQG------RRVMVMRSHCH    447  

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