hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm02067/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1548  ( 789 res)   mpm02067

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Band_41  FERM domain (Band 4.1 family)                  271.6    1.1e-77   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Band_41    1/1      95   285 ..     1   210 []   271.6  1.1e-77

Alignments of top-scoring domains:
Band_41: domain 1 of 1, from 95 to 285: score 271.6, E = 1.1e-77
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                      c+v+llD+t       Kk+kGq L+d+   hL+l+E dYFGL + D 
   mKIAA1548    95    CRVSLLDGTDVSVDLPKKAKGQELFDQIMYHLDLIESDYFGLRFMD- 140  

                   DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT
                      s++   WLd  K i+kQ vk+++Py Lh+RvKFY +  pn Lr+e T
   mKIAA1548   141 ---SAQVAHWLDGTKSIKKQ-VKIGSPYCLHLRVKFYSSE-PNNLREELT 185  

                   rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC
                   rylf LQ+kqdIl+G+l Cpf+tAv LA Y  Q+e+GDY+  +H +    
   mKIAA1548   186 RYLFVLQLKQDILSGKLECPFDTAVQLAAYNLQAELGDYDLAEHSPE--- 232  

                   LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk
                      +s +++ P       q  +++ E  I+e  ke+rG++p++Ae +YL+
   mKIAA1548   233 --LVSEFRFVP------IQ--TEEMELAIFEKWKEYRGQTPAQAETNYLN 272  

                   iArdLemYGVdff<-*
                    A+ LemYGVd +   
   mKIAA1548   273 KAKWLEMYGVDMH    285  

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