hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07188/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1547  ( 897 res)   mbg07188

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                   154.3    1.2e-41   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7     601   638 ..     1    46 []    22.7    0.053
WD40       2/7     644   685 ..     1    46 []    22.1    0.079
WD40       3/7     690   729 ..     1    46 []    29.4  0.00049
WD40       4/7     732   771 ..     1    46 []    44.6  1.3e-08
WD40       5/7     774   812 ..     1    46 []     6.1       54
WD40       6/7     814   853 ..     1    46 []    22.2    0.075
WD40       7/7     854   894 ..     1    46 []    20.1     0.32

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 601 to 638: score 22.7, E = 0.053
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                        +++ tl+ H     V++v++s         +++++g+ g++++Wd
   mKIAA1547   601    HaRQINTLS-HGE--VVCAVTISNPT------RHVYTGGKGCVKIWD 638  

                   <-*
                      
   mKIAA1547     -     -    

WD40: domain 2 of 7, from 644 to 685: score 22.1, E = 0.079
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      ++++++ l+    ++  +++s++  pdg      + l++g++ +t+ 
   mKIAA1547   644    SkSPISQLDclNRDN--YIRSCKLLPDG------RTLIVGGeASTLT 682  

                   lWd<-*
                   +Wd   
   mKIAA1547   683 IWD    685  

WD40: domain 3 of 7, from 690 to 729: score 29.4, E = 0.00049
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++  ++l+      +++++a+spd       ++ +s+++Dg+i +W
   mKIAA1547   690    TpRIKAELTSSAP--ACYALAISPDA------KVCFSCCsDGNIAVW 728  

                   d<-*
                   d   
   mKIAA1547   729 D    729  

WD40: domain 4 of 7, from 732 to 771: score 44.6, E = 1.3e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++l+r ++gHt+  + +++++s+dg      + l +g+ D+t+r W
   mKIAA1547   732    NqTLVRQFQGHTD--GASCIDISHDG------TKLWTGGlDNTVRSW 770  

                   d<-*
                   d   
   mKIAA1547   771 D    771  

WD40: domain 5 of 7, from 774 to 812: score 6.1, E = 54
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++l+  +  t+   + s+ ++p+g      ++la+g + +++ + 
   mKIAA1547   774    EgRQLQQHD-FTS--QIFSLGYCPTG------EWLAVGMeSSNVEVL 811  

                   d<-*
                   +   
   mKIAA1547   812 H    812  

WD40: domain 6 of 7, from 814 to 853: score 22.2, E = 0.075
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+   + l+ H++   V+s++f   g      ++++s ++D+ +  W
   mKIAA1547   814    TkPDKYQLHLHES--CVLSLKFAYCG------KWFVSTGkDNLLNAW 852  

                   d<-*
                       
   mKIAA1547   853 R    853  

WD40: domain 7 of 7, from 854 to 894: score 20.1, E = 0.32
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+   ++++  ++ s+V+s+++s d+      +++++gs+D++  ++
   mKIAA1547   854    TpYGASIFQSKES-SSVLSCDISADD------KYIVTGSgDKKATVY 893  

                   d<-*
                   +   
   mKIAA1547   894 E    894  

//