hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07188/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1547  ( 897 res)   mbg07188

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TLE_N    Groucho/TLE N-terminal Q-rich domain           329.4    4.2e-95   1
WD40     WD domain, G-beta repeat                       123.7    3.4e-33   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TLE_N      1/1     134   269 ..     1   138 []   329.4  4.2e-95
WD40       1/6     603   638 ..     1    38 []    18.0     0.22
WD40       2/6     648   685 ..     1    38 []    14.2      3.1
WD40       3/6     692   729 ..     1    38 []    27.9  0.00023
WD40       4/6     734   771 ..     1    38 []    41.5  1.8e-08
WD40       5/6     816   853 ..     1    38 []    21.5     0.02
WD40       6/6     858   894 ..     1    38 []    15.5      1.2

Alignments of top-scoring domains:
TLE_N: domain 1 of 1, from 134 to 269: score 329.4, E = 4.2e-95
                   *->myPqsrrhpaalqapqqgplKftvaesldRiKeEFqfLqaqYHslKl
                      myPq+r hpa++q++q+g +Kftvaes+dRiK+EFqfLqaqYHslK+
   mKIAA1547   134    MYPQGR-HPAPHQPGQPG-FKFTVAESCDRIKDEFQFLQAQYHSLKV 178  

                   EceKLasEKtEmqRHYvmYYEmsYGLniEmHKqaEivKRLnaiiaqllPf
                   E++KLa+EKtEmqRHYvmYYEmsYGLniEmHKq+Ei+KRLn+i+aq++Pf
   mKIAA1547   179 EYDKLANEKTEMQRHYVMYYEMSYGLNIEMHKQTEIAKRLNTILAQIMPF 228  

                   LsqeHqqqvlqAveRAKqvtmaELnaiigqqqlqaqqlsha<-*
                   LsqeHqqqv+qAveRAKqvtm+ELnaiigqqqlqaq+lsha   
   mKIAA1547   229 LSQEHQQQVAQAVERAKQVTMTELNAIIGQQQLQAQHLSHA    269  

WD40: domain 1 of 6, from 603 to 638: score 18.0, E = 0.22
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++ +l++    V++v +s +  +++ +g+  g++kiWd   
   mKIAA1547   603    RQINTLsHG-EVVCAVTISNP-TRHVYTGGK-GCVKIWD    638  

WD40: domain 2 of 6, from 648 to 685: score 14.2, E = 3.1
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +       + +++++  pd g++l+ g++  t+ iWd   
   mKIAA1547   648    ISQLDClNRDNYIRSCKLLPD-GRTLIVGGEASTLTIWD    685  

WD40: domain 3 of 6, from 692 to 729: score 27.9, E = 0.00023
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +a+l+    +++++a+spd  ++++s+++Dg+i +Wd   
   mKIAA1547   692    RIKAELtSSAPACYALAISPD-AKVCFSCCSDGNIAVWD    729  

WD40: domain 4 of 6, from 734 to 771: score 41.5, E = 1.8e-08
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++ ++gHt++ +c+++s+d g+ l +g+ D+t++ Wd   
   mKIAA1547   734    TLVRQFqGHTDGASCIDISHD-GTKLWTGGLDNTVRSWD    771  

WD40: domain 5 of 6, from 816 to 853: score 21.5, E = 0.02
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ l+ H+s V +++f+   g++++s + D+ +  W    
   mKIAA1547   816    PDKYQLhLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWR    853  

WD40: domain 6 of 6, from 858 to 894: score 15.5, E = 1.2
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +   +   s+V ++++s d  +++++gS D++  +++   
   mKIAA1547   858    ASIFQSkES-SSVLSCDISAD-DKYIVTGSGDKKATVYE    894  

//