hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00554/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1544  ( 1356 res)   mbg00554

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    55.7    5.9e-12   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/5    1079  1116 ..     1    46 []     0.8  3.7e+02
WD40       2/5    1119  1162 ..     1    46 []    13.3      3.8
WD40       3/5    1179  1218 ..     1    46 []     9.4       16
WD40       4/5    1262  1300 ..     1    46 []    18.9      0.5
WD40       5/5    1303  1342 ..     1    46 []    15.8      1.5

Alignments of top-scoring domains:
WD40: domain 1 of 5, from 1079 to 1116: score 0.8, E = 3.7e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+ + ++++  ++    ++  +  d+       +l++g +D++ r++
   mKIAA1544  1079    TdLVDQSIQ-INA----HCFVVTADN-----RYILICGFwDKSFRVY 1115 

                   d<-*
                   +   
   mKIAA1544  1116 S    1116 

WD40: domain 2 of 5, from 1119 to 1162: score 13.3, E = 3.8
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+kl+++  gH +   Vt++a s +  +  ++ +++sgs+D t+ lW
   mKIAA1544  1119    TgKLTQIVFGHWD--VVTCLARSESYIG--GDCYIVSGSrDATLLLW 1161 

                   d<-*
                       
   mKIAA1544  1162 Y    1162 

WD40: domain 3 of 5, from 1179 to 1218: score 9.4, E = 16
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       + + ++l+gH++  +V +v+++          l++sg + g + + 
   mKIAA1544  1179    YpAPRAVLTGHDH--EVVCVSVCAEL------GLVISGAkEGPCLVH 1217 

                   d<-*
                       
   mKIAA1544  1218 T    1218 

WD40: domain 4 of 5, from 1262 to 1300: score 18.9, E = 0.5
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++kll+ ++  ++  + +++  s+dg      + l++g+++g + +W
   mKIAA1544  1262    NgKLLAQME-IND--STRAILLSSDG------QNLVTGGdNGVVEVW 1299 

                   d<-*
                       
   mKIAA1544  1300 Q    1300 

WD40: domain 5 of 5, from 1303 to 1342: score 15.8, E = 1.5
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + k+l++++g ++  ++++++ s+d       + l++g   g+i  +
   mKIAA1544  1303    DfKQLYIYPGCDA--GIRAMDLSHDQ------RTLITGMaSGSIVAF 1341 

                   d<-*
                   +   
   mKIAA1544  1342 N    1342 

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