hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00554/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1544  ( 1356 res)   mbg00554

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Beach    Beige/BEACH domain                             701.4   4.2e-207   1
DUF1088  Domain of Unknown Function (DUF1088)           453.0   2.6e-132   1
WD40     WD domain, G-beta repeat                        71.1    2.3e-17   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF1088    1/1     376   543 ..     1   201 []   453.0 2.6e-132
Beach      1/1     696   973 ..     1   287 []   701.4 4.2e-207
WD40       1/5    1076  1116 ..     1    38 []     7.4       25
WD40       2/5    1121  1162 ..     1    38 []    28.8  0.00012
WD40       3/5    1181  1218 ..     1    38 []     9.9       12
WD40       4/5    1264  1300 ..     1    38 []    10.8      9.4
WD40       5/5    1305  1342 ..     1    38 []    16.0     0.93

Alignments of top-scoring domains:
DUF1088: domain 1 of 1, from 376 to 543: score 453.0, E = 2.6e-132
                   *->EGRLlaHAmkDHvvRVANEAeFILNRlRAEDVsKHAeFEsecaqqlA
                      EGRLl+HAmkDH+vRVANEAeFILNR+RAEDV+KHAeFEs+caq++A
   mKIAA1544   376    EGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAA 422  

                   dRrEEekmCDhLIaaarlRDsvnAtrLleKisnILsdkhgawggtshsss
                   dRrEEekmCDhLI+aa++RD+v+A++L++Ki+nIL++khgawg++shs  
   mKIAA1544   423 DRREEEKMCDHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHS-- 470  

                   ggaivgavqllqFWkLDvWEDDsRRRkRFVrNAyGSrHeEAnLkeavenv
                           ql++FW+LD+WEDD+RRR+RFVrNA+GS+H+EA+Lk+ave+ 
   mKIAA1544   471 --------QLHDFWRLDYWEDDLRRRRRFVRNAFGSTHAEALLKSAVEY- 511  

                   cifklrEepeiseeekirKvkkglfSqrqnssnhpsgqhngellgehELv
                              ++ee+++K+kk+++Sq+++++n           +e+EL+
   mKIAA1544   512 -----------GTEEDVVKSKKAFRSQAIVNQN-----------SETELM 539  

                   lEsD<-*
                   lE+D   
   mKIAA1544   540 LEGD    543  

Beach: domain 1 of 1, from 696 to 973: score 701.4, E = 4.2e-207
                   *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL
                      T+RWqr+eISNFeYLm+LNt+AGR+yNDL+QYPVFPW+l++Y+Se+L
   mKIAA1544   696    TQRWQRREISNFEYLMFLNTIAGRTYNDLNQYPVFPWVLTNYESEEL 742  

                   DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY
                   DL+ P +FRdLSKPiGA++p+R+ +++eRYe +e+++   +ppFHY tHY
   mKIAA1544   743 DLTLPGNFRDLSKPIGALNPKRAVFYAERYETWEEDQ---SPPFHYNTHY 789  

                   SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm
                   S+a   l++L+R+ePFt+ fL+  +GkFDh+DR+F+Si+++Wr  s++++
   mKIAA1544   790 STATSALSWLVRIEPFTTFFLNANDGKFDHPDRTFSSIARSWRT-SQRDT 838  

                   tDVKELIPEFFyLPEfLvNrngfDlGvrQnGekVnDVdLPPWAkgDEKAd
                   +DVKELIPEF+yLPE++vN+ng+ lGvr +  +VnDVdLPPWAk      
   mKIAA1544   839 SDVKELIPEFYYLPEMFVNSNGYHLGVREDEVVVNDVDLPPWAK-----K 883  

                   PeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhltY
                   Pe+F++++R ALES++VS++LH+WIDLIFGYKQrG+eAv+A+NVFh+ltY
   mKIAA1544   884 PEDFVRINRMALESEFVSCQLHQWIDLIFGYKQRGPEAVRALNVFHYLTY 933  

                   eGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-*
                   eG+V+ldsi+DPv r+A+eaqI nFGQTP+QL+++PHP+R   
   mKIAA1544   934 EGSVNLDSITDPVLREAMEAQIQNFGQTPSQLLIEPHPPR    973  

WD40: domain 1 of 5, from 1076 to 1116: score 7.4, E = 25
                   *->eclavl.gHtspVtcvafspd..sgpllasgSrDgtikiWd<-*
                       +++ l + +  +++ +f+  ++++ +l++g +D++ ++++   
   mKIAA1544  1076    RQITDLvDQSIQINAHCFVVTadNRYILICGFWDKSFRVYS    1116 

WD40: domain 2 of 5, from 1121 to 1162: score 28.8, E = 0.00012
                   *->eclavl.gHtspVtcvafspd...sgpllasgSrDgtikiWd<-*
                      +++++  gH + Vtc+a s +  ++ ++++sgSrD t+ +W    
   mKIAA1544  1121    KLTQIVfGHWDVVTCLARSESyigGDCYIVSGSRDATLLLWY    1162 

WD40: domain 3 of 5, from 1181 to 1218: score 9.9, E = 12
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       + avl+gH + V cv+++ +   l++sg   g + +     
   mKIAA1544  1181    APRAVLtGHDHEVVCVSVCAE-LGLVISGAKEGPCLVHT    1218 

WD40: domain 4 of 5, from 1264 to 1300: score 10.8, E = 9.4
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++la  +   ++ +++  s d g+ l++g+++g + +W    
   mKIAA1544  1264    KLLAQMeIN-DSTRAILLSSD-GQNLVTGGDNGVVEVWQ    1300 

WD40: domain 5 of 5, from 1305 to 1342: score 16.0, E = 0.93
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++l++++g  +++++++ s+d +++l++g + g+i  ++   
   mKIAA1544  1305    KQLYIYpGCDAGIRAMDLSHD-QRTLITGMASGSIVAFN    1342 

//