hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mnh/mnh10009/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1541  ( 471 res)   mnh10009

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD40 repeats                                    51.7    9.4e-11   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/7      45    80 ..     1    46 []     7.4       33
WD40       2/7     107   147 ..     1    46 []    11.2      8.2
WD40       3/7     189   228 ..     1    46 []    15.0        2
WD40       4/7     239   279 ..     1    46 []     7.4       33
WD40       5/7     298   336 ..     1    46 []     5.3       73
WD40       6/7     363   394 ..     1    46 []     0.3  4.5e+02
WD40       7/7     430   467 ..     1    46 []     5.5       66

Alignments of top-scoring domains:
WD40: domain 1 of 7, from 45 to 80: score 7.4, E = 33
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++ +++ +       +++v f+ +g      +lla+g++ g + ++
   mKIAA1541    45    VdEDVAEAD------IISTVEFNYSG------DLLATGDkGGRVVIF 79   

                   d<-*
                       
   mKIAA1541    80 Q    80   

WD40: domain 2 of 7, from 107 to 147: score 11.2, E = 8.2
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   l++l+  +    ++ +++ p  ++     +++ + +D+ti+lW
   mKIAA1541   107    EfDYLKSLE-IEE--KINKIRWLPQQNA----AHFLLSTnDKTIKLW 146  

                   d<-*
                   +   
   mKIAA1541   147 K    147  

WD40: domain 3 of 7, from 189 to 228: score 15.0, E = 2
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgsDgtirlW
                      + ++ r++ ++Ht    ++s+++++d+      +  +s++D  i lW
   mKIAA1541   189    EaSPRRIFAnAHTY--HINSISVNSDH------ETYLSADDLRINLW 227  

                   d<-*
                   +   
   mKIAA1541   228 H    228  

WD40: domain 4 of 7, from 239 to 279: score 7.4, E = 33
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   + ++  t    +t+  f+p+       n+++ +s+ gtirl 
   mKIAA1541   239    VdIKPANMEELTE--VITAAEFHPHQ-----CNVFVYSSsKGTIRLC 278  

                   d<-*
                   d   
   mKIAA1541   279 D    279  

WD40: domain 5 of 7, from 298 to 336: score 5.3, E = 73
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++  + ++   +  ++++v+fs++g      +++ + +  + +++W
   mKIAA1541   298    DpSSRSFFSEIIS--SISDVKFSHSG------RYMMTRDyLS-VKVW 335  

                   d<-*
                   d   
   mKIAA1541   336 D    336  

WD40: domain 6 of 7, from 363 to 394: score 0.3, E = 4.5e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++    +++          ++++ ++      + + +gs ++  r++
   mKIAA1541   363    NdCIFDKFE----------CCWNGSD------SAIMTGSyNNFFRMF 393  

                   d<-*
                   d   
   mKIAA1541   394 D    394  

WD40: domain 7 of 7, from 430 to 467: score 5.5, E = 66
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   + +l+  ++   +++ a++p        +++a++ +++ ++++
   mKIAA1541   430    DeISVDSLD-FNK--KILHTAWHPME------SIIAVAAtNN-LYIF 466  

                   d<-*
                       
   mKIAA1541   467 Q    467  

//