hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mnh/mnh10009/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1541  ( 471 res)   mnh10009

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        38.5    1.5e-07   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/6      43    80 ..     1    38 []     4.0       65
WD40       2/6     109   147 ..     1    38 []    11.4        8
WD40       3/6     191   228 ..     1    38 []     7.6       24
WD40       4/6     241   279 ..     1    38 []     5.6       42
WD40       5/6     300   336 ..     1    38 []     9.3       14
WD40       6/6     431   467 ..     1    38 []     0.6  1.7e+02

Alignments of top-scoring domains:
WD40: domain 1 of 6, from 43 to 80: score 4.0, E = 65
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        + +  +  + ++ v f+ + g lla+g   g + i+    
   mKIAA1541    43    GAVDEDvAEADIISTVEFNYS-GDLLATGDKGGRVVIFQ    80   

WD40: domain 2 of 6, from 109 to 147: score 11.4, E = 8
                   *->eclavl.gHtspVtcvafspd.sgpllasgSrDgtikiWd<-*
                      + l++l+     ++ +++ p  +  +++ +  D+tik+W+   
   mKIAA1541   109    DYLKSLeIE-EKINKIRWLPQqNAAHFLLSTNDKTIKLWK    147  

WD40: domain 3 of 6, from 191 to 228: score 7.6, E = 24
                   *->eclavl..gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       + +++ ++Ht  +++++++ d  ++ +s+ +   i +W+   
   mKIAA1541   191    SPRRIFanAHTYHINSISVNSD-HETYLSADD-LRINLWH    228  

WD40: domain 4 of 6, from 241 to 279: score 5.6, E = 42
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                         a  +  t  +t+  f+p+++++++ +S+ gti++ d   
   mKIAA1541   241    IKPANMeELTEVITAAEFHPHQCNVFVYSSSKGTIRLCD    279  

WD40: domain 5 of 6, from 300 to 336: score 9.3, E = 14
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                         + ++   s++++v+fs++ g+++ +     ++k+Wd   
   mKIAA1541   300    SSRSFFsEIISSISDVKFSHS-GRYMMTRDY-LSVKVWD    336  

WD40: domain 6 of 6, from 431 to 467: score 0.6, E = 1.7e+02
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      e      + ++ +   a++p   +++a +   ++++i+    
   mKIAA1541   431    EISVDSlDFNKKILHTAWHPM-ESIIAVAAT-NNLYIFQ    467  

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