hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp01012/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1540  ( 423 res)   mbp01012

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
7tm_1    7 transmembrane receptor (rhodopsin family)    294.3    1.5e-84   1
7tm_5    7TM chemoreceptor                             -153.0       0.42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
7tm_1      1/1      88   345 ..     1   272 []   294.3  1.5e-84
7tm_5      1/1      65   353 ..     1   326 []  -153.0     0.42

Alignments of top-scoring domains:
7tm_1: domain 1 of 1, from 88 to 345: score 294.3, E = 1.5e-84
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+LV+ vi+++++++++t++fi+NLAvAD++++l+++p++l+ +v+
   mKIAA1540    88    GNVLVCHVIFKNQRMHSATSLFIVNLAVADIMITLLNTPFTLVRFVN 134  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                    ++W+fG+ +C+++ + +++++ +S l+LtaI++DR+++I+hPl+ r + 
   mKIAA1540   135 -STWVFGKGMCHVSRFAQYCSLHVSALTLTAIAVDRHQVIMHPLKPRISI 183  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   t   ++++ i+++Wv+a+ +slP+++ +++ t+ ++++ +    Cl+dfp
   mKIAA1540   184 T---KGVIYIAVIWVMATFFSLPHAICQKLFTFKYSED-IVRSLCLPDFP 229  

                   evstasvstwlvsyvllstlvgFllPllvilvcYtrIlrtlrkrarkgas
                   e++     +++ ++ l  +++ +llPl++i+v+Y r++++l+ ++  g+ 
   mKIAA1540   230 EPA----DLFWKYLDLATFILLYLLPLFIISVAYARVAKKLWLCNTIGDV 275  

                   .....kkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiims
                   ++++  + ++k++ ++k+l++vvv+F+lCW+P++  +ll + + ++    
   mKIAA1540   276 tteqyLALRRKKKTTVKMLVLVVVLFALCWFPLNCYVLLLSSKaIH---- 321  

                   stCelervlptallvtlwLayvNsclNPiIY<-*
                          + ++++++++w+a+++ c+NP+IY   
   mKIAA1540   322 -------TNNALYFAFHWFAMSSTCYNPFIY    345  

7tm_5: domain 1 of 1, from 65 to 353: score -153.0, E = 0.42
                   *->sflaSpeflattlHiitv.IslPihifGfYcIlfKTPkkMksVKwsL
                      s   + + l ++ +++t+ +sl+ +++   +I++    +M s   sL
   mKIAA1540    65    SQNPTVKALLIVAYSFTIvFSLFGNVLVCHVIFKNQ--RMHSA-TSL 108  

                   LnlHfwsallDlslsfLtiPylffPalaGyplGllsylg......vPtsi
                   ++  +  a  D+++++L +P+ +  ++        ++ ++++  +v+   
   mKIAA1540   109 FIVNLAVA--DIMITLLNTPFTLVRFV------NSTWVFgkgmchVSRFA 150  

                   QvyigvtllaakiivvavSiillFEnRynslvnirnkfriwkkwfRilyl
                   Q    +++l     v a +++++  +R+++++    k ri+   + ++y+
   mKIAA1540   151 Q----YCSLH----VSALTLTAIAVDRHQVIMHP-LKPRISI-TKGVIYI 190  

                   ilnYilavlfflp....iylniPeyEDQeaaklkvlkkyPClppeffdep
                   ++  + a++f lp+     l+   y   ++ +        Clp++   ++
   mKIAA1540   191 AVIWVMATFFSLPhaicQKLFTFKY-SEDIVRS------LCLPDFPEPAD 233  

                   gffvlaidsttwityflisivfflliiilqiifFvfYlliiyyLkilkev
                    +f  ++d       ++i+++++ l+ii+     v     +++   +  v
   mKIAA1540   234 -LFWKYLDL-----ATFILLYLLPLFIISVAYARVA--KKLWLCNTIGDV 275  

                   rstmSkkTrklQkkFfialiviQvsiPllvilpiiP.lfiylifsiifge
                   ++ +    r++ k+ ++ l+ + v + + +    +P    y+++      
   mKIAA1540   276 TTEQYLALRRKKKTTVKMLV-L-VVVLFALC--WFPlN-CYVLLLSSKA- 319  

                   ntYYnQgNemalnNlafiiGcislHGllST....ivMllvHkPYR<-*
                      +         N +++   +    + ST  ++++  +++  +R   
   mKIAA1540   320 --IHTN-------NALYFA--FHWFAMSSTcynpFIYCWLNENFR    353  

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