hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10763/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1538  ( 983 res)   mbg10763

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     70.4    2.2e-16   6
BTB      Broad-Complex, Tramtrack and Bric a brac        66.4    3.5e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      31   167 ..     1   114 []    66.4  3.5e-15
ZnF_C2H2   1/6     211   231 ..     1    23 []     9.3       28
ZnF_C2H2   2/6     286   308 ..     1    23 []    20.0     0.33
ZnF_C2H2   3/6     314   336 ..     1    23 []     9.2       29
ZnF_C2H2   4/6     342   365 ..     1    23 []    21.4     0.13
ZnF_C2H2   5/6     701   723 ..     1    23 []    18.7     0.85
ZnF_C2H2   6/6     740   762 ..     1    23 []    21.2     0.14

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 31 to 167: score 66.4, E = 3.5e-15
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDvtl++g+         +kf+a  H++vLaa+   Sp+F++ ++ +
   mKIAA1538    31    CDVTLIAGD---------TKFPA--HRSVLAAS---SPFFREALLAs 63   

                   ..........................................ieldDeal
                    + + ++ ++++ +++ +++  +++++++++ +++++++++  el++   
   mKIAA1538    64 aplplppvtggsapspatttaasssssspppasphssspprvLELPG--- 110  

                   lievspeaFralLnflYt.kldlpeed..venveelLelAdfldSYGqip
                      v + aF  +Lnf+Y+ +l lp  +++   v e+ +l ++l    +i 
   mKIAA1538   111 ---VPAAAFSDVLNFIYSaRLALPGGGgdGAAVAEIGALGRRL----GIS 153  

                   .lvelCeefllknl<-*
                   +l+ l e          
   mKIAA1538   154 rLQGLGEGGDTWVP    167  

ZnF_C2H2: domain 1 of 6, from 211 to 231: score 9.3, E = 28
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + Cp  Cgksf +++ L+ H       
   mKIAA1538   211    FPCPR-CGKSFIHPkRLQTHEA--    231  

ZnF_C2H2: domain 2 of 6, from 286 to 308: score 20.0, E = 0.33
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C   C +s+ + ++LkrH  vH   
   mKIAA1538   286    YVCAA-CERSYVTLsSLKRHSNVH    308  

ZnF_C2H2: domain 3 of 6, from 314 to 336: score 9.2, E = 29
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + C k+f  ++  ++H   H   
   mKIAA1538   314    YPCRY-CEKVFALAeYRTKHEVWH    336  

ZnF_C2H2: domain 4 of 6, from 342 to 365: score 21.4, E = 0.13
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C + C  +f ++ +Lk H+r  H   
   mKIAA1538   342    YQCIF-CWDTFVTYyNLKTHQRaFH    365  

ZnF_C2H2: domain 5 of 6, from 701 to 723: score 18.7, E = 0.85
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C   C + f + + L++H+  H   
   mKIAA1538   701    HRCGD-CAQAFATVrKLRKHQEAH    723  

ZnF_C2H2: domain 6 of 6, from 740 to 762: score 21.2, E = 0.14
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp+ C k+++++ aL+rH ++H   
   mKIAA1538   740    FTCPH-CAKVCKTAaALNRHGQRH    762  

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