hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg10763/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1538 ( 983 res) mbg10763 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- zf-C2H2 Zinc finger, C2H2 type 101.2 2e-26 6 BTB BTB/POZ domain 63.0 6.6e-15 1 Extensin_2 Extensin-like region -146.2 0.93 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- BTB 1/1 21 158 .. 1 135 [] 63.0 6.6e-15 zf-C2H2 1/6 211 233 .. 1 24 [] 25.1 0.0017 zf-C2H2 2/6 286 308 .. 1 24 [] 24.8 0.002 zf-C2H2 3/6 314 336 .. 1 24 [] 16.8 0.53 zf-C2H2 4/6 342 365 .. 1 24 [] 18.5 0.16 Extensin_2 1/1 30 505 .. 1 385 [] -146.2 0.93 zf-C2H2 5/6 701 723 .. 1 24 [] 20.7 0.034 zf-C2H2 6/6 740 762 .. 1 24 [] 24.4 0.0026 Alignments of top-scoring domains: BTB: domain 1 of 1, from 21 to 158: score 63.0, E = 6.6e-15 *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal lne+r++g +cDVtL +gd kf+AH+ vLaa+Sp+F++ mKIAA1538 21 LNEQRLRGLFCDVTLIAGD--------TKFPAHRSVLAASSPFFREA 59 Ftgqfkes................iteeessvs..............sei ++ + + ++ ++++ +++ +t + ss+s+++++ ++++++++ ++ mKIAA1538 60 LLAS---AplplppvtggsapspaTTTAASSSSsspppasphsssppRVL 106 eledvspedfealLefiYtgelsitqdqksPssc.kseenvedlLalAad el++v++ +f +L+fiY+++l ++ +++ + v+++ al+ + mKIAA1538 107 ELPGVPAAAFSDVLNFIYSARLALP-------GGgGDGAAVAEIGALG-R 148 llqipslvdkCeefliksl<-* +l i + ++ l mKIAA1538 149 RLGISR---------LQGL 158 zf-C2H2: domain 1 of 6, from 211 to 233: score 25.1, E = 0.0017 *->ykCpfdCgksFsrksnLkrHlrtH<-* + Cp CgksF +++ L++H + mKIAA1538 211 FPCP-RCGKSFIHPKRLQTHEAQC 233 zf-C2H2: domain 2 of 6, from 286 to 308: score 24.8, E = 0.002 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C C +s+ + s+LkrH ++H mKIAA1538 286 YVCA-ACERSYVTLSSLKRHSNVH 308 zf-C2H2: domain 3 of 6, from 314 to 336: score 16.8, E = 0.53 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C +C k+F + ++H H mKIAA1538 314 YPCR-YCEKVFALAEYRTKHEVWH 336 zf-C2H2: domain 4 of 6, from 342 to 365: score 18.5, E = 0.16 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C C +F + +nLk+H+r H mKIAA1538 342 YQCI-FCWDTFVTYYNLKTHQRAfH 365 Extensin_2: domain 1 of 1, from 30 to 505: score -146.2, E = 0.93 *->lltlvvalvslslpseasakYsYsSPPPpekpYvYkSPPpPspkyvy + +++ ++p s sSP S P+P p+ mKIAA1538 30 FCDVTLIAGDTKFPAHRS-VLAASSPFFR--EALLASAPLPLPPVTG 73 kSPPPpkkpY....vYsSPPPPsyvykSPPPPkpyvYkSPPpP....... S P p ++ sSPPP +S PP v + P P ++ mKIAA1538 74 GSAPSPATTTaassSSSSPPPA--SPHSSSPP--RVLELPGVPaaafsdv 119 .kyvYkSPPpPv.................................ykYkS +++Y+ + +++++++ + + +++ + ++ ++ ++++++++ mKIAA1538 120 lNFIYSARLALPggggdgaavaeigalgrrlgisrlqglgeggdtWV--- 166 PPPPthsppPpyvykSPPPPpk.........kyvykSpPpptPvYkYkSP PP Pt + S P + +++++++ v tP + P mKIAA1538 167 PPAPT------SMVTSDPTEDGlgagprtdgEWVGDKAEALTPDSQPRRP 210 PPPp.............................................. P p+ +++ ++++ ++++ + +++++++++ + +++ ++++++ + + mKIAA1538 211 FPCPrcgksfihpkrlqtheaqcrrgsntrgsaglgpgvsgsggpagvda 260 .....yv.YkspPpPvkkripyvYkSPPPPpPYvYkSpPppvkkyiyksp + +++v+++ P + v k + Y + y+ s+ mKIAA1538 261 salpqPVgFRDGP-------EHVVKVVGGHV--LYVCAACER-SYVTLSS 300 pppephkYvYkSPPPPpPYvyesvpeqkikYvYkSPPPPkksYkspsppk + + ++ P Y + +++ + + ++ Y+ mKIAA1538 301 LKRHSNVHSWRRKYPCR-YCEKVFALAEYRTKHEVWHTGERRYQ----CI 345 yVYkSpPpPvipykYkSPPPPkkkyspaP..rkpyvYkSPPPPt...... + + + + +Y k ++ a ++ p S P ++ +++ mKIAA1538 346 FCWD-----TFVTYYN-----LKTHQRAFhgISPGLLASEKTPNggykpr 385 ....yvYkSpPpPykpptppkiyksPPPPtP.vyvYkspPpippiksssp ++ Y+ P + + +p k y+ P +P + p p + sp mKIAA1538 386 lntlKLYRLLPM-RAAKRPYKTYSQGAPEAPlSPSLHTPAP--AAMPASP 432 pPvyvYkSpPppvysPPPP.yvYssPPPPvy................... +P + pP p + PPP + P P v +++++++ ++++ ++++ mKIAA1538 433 QPLP----PPAPEPGPPPSvITFAHPAPSVIvhgssssgaagggpagtgg 478 .......vynsaPvykksPPkhhYiYsSPPPphh<-* ++ + y +P ++P k Y PPPp mKIAA1538 479 sqaasviTYTTPP---RPPKKREY----PPPPPE 505 zf-C2H2: domain 5 of 6, from 701 to 723: score 20.7, E = 0.034 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C dC ++F + L++H+ H mKIAA1538 701 HRCG-DCAQAFATVRKLRKHQEAH 723 zf-C2H2: domain 6 of 6, from 740 to 762: score 24.4, E = 0.0026 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++Cp +C k++++ + L+rH ++H mKIAA1538 740 FTCP-HCAKVCKTAAALNRHGQRH 762 //