hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg18407/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1537  ( 628 res)   mbg18407

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
RUN      RUN domain                                     121.4    1.7e-32   1
FYVE     FYVE zinc finger                               102.9    6.3e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RUN        1/1      67   191 ..     1   174 []   121.4  1.7e-32
FYVE       1/1     557   621 ..     1    77 []   102.9  6.3e-27

Alignments of top-scoring domains:
RUN: domain 1 of 1, from 67 to 191: score 121.4, E = 1.7e-32
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +++ ++e++l+HGLk                          + s+ls
   mKIAA1537    67    QFFVVMEHCLKHGLK-------------------------GRKSFLS 88   

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   +       ++        ++p+++v ++ ++ ++i  ++++L+      +
   mKIAA1537    89 Y-------NKTI------WGPLELVEKLYPEAEEIGASVRDLPG-----L 120  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   kt++gr R  AW+RlaL++k++  yl+ L+   ell+++Y+  Al+++  
   mKIAA1537   121 KTPLGRAR--AWLRLALMQKKMADYLRCLIIQRELLSEFYEYHALMME-- 166  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    eeg   + +lL+gL+++d +L++k+e   
   mKIAA1537   167 -EEG-AVIVGLLVGLNVIDANLCVKGE    191  

FYVE: domain 1 of 1, from 557 to 621: score 102.9, E = 6.3e-27
                   *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll
                       +W++D+++++C  C+k+F+ l kR+HHCR+CG ifC+ Cs+++++l
   mKIAA1537   557    LVWLKDKDATHCKLCEKEFS-LSKRKHHCRNCGEIFCNACSDNELPL 602  

                   pylgiaallkndviekpvRVCdsCydrlnk<-*
                   p+             kpvRVCdsC+++l +   
   mKIAA1537   603 PSS-----------PKPVRVCDSCHAMLIQ    621  

//