hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp15066/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1536  ( 703 res)   mbp15066

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
CoCoA    Coiled-coil transcriptional coactivator-like  1268.6          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CoCoA      1/1      21   608 ..     1   617 []  1268.6        0

Alignments of top-scoring domains:
CoCoA: domain 1 of 1, from 21 to 608: score 1268.6, E = 0
                   *->meekrgVsFlnVAvtYvpnTkVeChYTIpsghksSsRDWIGiFKVnt
                      +++++gV+FlnVA+tY+pnTkVeChYT+p+g+++S++DWIGiFKV++
   mKIAA1536    21    APSRGGVNFLNVARTYIPNTKVECHYTLPPGTMPSASDWIGIFKVEA 67   

                   ltvrDYeTFvWAlaPEgaqegsdahCSVqFqasYLPiPGvqeYqFvYVDq
                   ++vrDY+TFvW+++PE++++gs+ h SVqFqasYLP+PG+q+YqF+YV++
   mKIAA1536    68 ACVRDYHTFVWSSVPESTTDGSPTHASVQFQASYLPKPGAQLYQFRYVNR 117  

                   rGdVcgiSesFvFaePrPldELVTLEdSGEGeddGdDlLLvVPKAtiLQN
                   +G Vcg+S++F+F+ePrP+dELVTLE+    +d+G+D+LLvVPKAt+LQN
   mKIAA1536   118 QGRVCGQSPPFQFREPRPMDELVTLEE----ADGGSDILLVVPKATVLQN 163  

                   qLEgaQkErndLmkkrlalegdVENERQRWKTDRDEFEILRsdkrsrIeq
                   qL+++Q+ErndLm+++l+le +V                  +++rsr+++
   mKIAA1536   164 QLDESQQERNDLMQLKLQLEDQV------------------TELRSRVQE 195  

                   LeaaLriSekkteeLkeqhkelqsseesakaErNlLlaqrAEnreRIleL
                   LeaaL+++++++ eL eq+k+l++s+++ ++Er++L+ q++++++RIleL
   mKIAA1536   196 LEAALATARQEHSELTEQYKGLSRSHGELSEERDILSQQQGDHVARILEL 245  

                   EqdiqtltkkkltkeveldrlrdtvkaltqEndrvLegtqdIkaelErek
                   E+diqt++ k+l keveldr+rdtvkalt+E++++L ++++ +a++E+++
   mKIAA1536   246 EDDIQTMSDKVLMKEVELDRVRDTVKALTREQEKLLRQLKEFQADKEQSE 295  

                   gELkvaqqenhhlnldlkeaksWqeeqsaqaqRlkettvqirDeeterid
                   +EL+  + en  ln +l+eaks qeeq aq qRlk++ + ++D+++++++
   mKIAA1536   296 AELQTVREENCCLNTELQEAKSRQEEQGAQVQRLKDKLAHMKDTLGQAQQ 345  

                   lqLevesLredLRtlQerLesSqqkallLgeeLaslsSlrdhtiaeLHks
                    ++e+e+L+e+LR+ Qe+++sSqqka lLgeeLas++ +rd+tiaeLH+s
   mKIAA1536   346 KVAELEPLKEQLRGVQELAASSQQKAALLGEELASAAGARDRTIAELHRS 395  

                   RLesAdlslklSdlslkLkEGqsqWaqEreaLrqSaEadkDrivkLsaEl
                   RLe+A+++++l++lsl++kE+++qW++Er++L+qS+Ea+kD+i+kLsaE+
   mKIAA1536   396 RLEVAEVNGRLAELSLHMKEEKCQWSKERTGLLQSMEAEKDKILKLSAEI 445  

                   lkleesLQEERSqRqkLeveLgqEkDarrVQLSEnrRELsELrsaLrvlQ
                   l+le+ +QEER+q  ++++eL++EkD+++VQLSE++REL+ELrsaLrvlQ
   mKIAA1536   446 LRLEKTVQEERTQSHVFKTELAREKDSSLVQLSESKRELTELRSALRVLQ 495  

                   kEkEQlqeEkQELldyvrrLElRLDklaDeKWkEdaaTPlcedkksslhr
                   kEkEQlq EkQELl+y+r+LE+RL+k+aDeKW Edaa   +ed+++  ++
   mKIAA1536   496 KEKEQLQTEKQELLEYMRKLEARLEKVADEKWTEDAA---TEDEEATAGL 542  

                   alsvDlldSdDEsPldEsVSseLspsaLDeedlsestpknPkenedlvVi
                   ++++ l+dS+DEsP+d    ++L+ ++L+e +   s+p +P+e++ lvVi
   mKIAA1536   543 SCPASLTDSEDESPED----MRLPSYGLCESGNTSSSPPGPREPSSLVVI 588  

                   qqpapiaPflsGlaednlse<-*
                   +qpapiaP+ sG+ e ++s+   
   mKIAA1536   589 NQPAPIAPQFSGPGEASSSD    608  

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