hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mph/mph00515/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1534 ( 493 res) mph00515 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Oxysterol_BP Oxysterol-binding protein 123.4 4.3e-33 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Oxysterol_BP 1/1 2 382 .. 1 440 [] 123.4 4.3e-33 Alignments of top-scoring domains: Oxysterol_BP: domain 1 of 1, from 2 to 382: score 123.4, E = 4.3e-33 *->kSqhsSsssltsklkfilsepkdltrRldipeeslspisLwsisqlw + + +l ++ l++ ++ e + ++ ql+ mKIAA1534 2 AQSRGFTAQLMGSGHVPLPQLDETSQ-VETVSEENKSLMWVLLRQLR 47 vGkdLskitlPvfinEpkSmLqrvtedleYpelLdkAaaredsltrWfly +G dLs+ lP+f +Ep S L +++ +lL++Aaa+ d+ r + mKIAA1534 48 PGMDLSRVVLPTFVLEPRSFLGKLSDYYYHGDLLSRAAAEDDPYCR-MKL 96 vaastlssysettrrvkKPlNPlLGEtFelkrendElp..nkgqyrllsE v++++ls++ +++ kKP NP+LGEtF ++ +p++n +++++E mKIAA1534 97 VLRWYLSGFYKKPKGIKKPYNPILGETFRCRWL---HPqtN-SHTFYIAE 142 QVSHHPPvsAffaespkskwrvqgevqikskFlGkslavmkeGltvhtil QVSHHPPvsAf+ + k ++g ++ kskF G+sl++ +G +t+l mKIAA1534 143 QVSHHPPVSAFYVSNRKDGFCMSGSITAKSKFYGNSLSALLDGKAKLTFL 192 dikdingkpEtYtwtqPnttveGILvGkpfvElSGdesvinsstGdkcvI k Yt+t P + +GIL G + +El G++ mKIAA1534 193 NRKE------EYTLTMPYAHCRGILYGTMTMEL-GGK------------- 222 eFktkGyfSGkkdsfkgrivkdpdgnkdKEkklytlsGkWndsmyikKvq + + i++ ++g +l+ W+ mKIAA1534 223 --------------VDVFIKEESSGG----TELF-----WT--------P 241 sksegelflDahktphealkvrpLeeqhelesrkaWkkvadalkvgnltv s ++ + + Leeq eles ++W v++a++ g+ + mKIAA1534 242 S--------EEVRRQRLKRHTVLLEEQSELESERLWQHVTRAIREGDQHK 283 ftktkneleerqRpllkptesrgvedqralf......krledkedldkee +t++k lee qR+ +++ + + ++ + lf ++ ++ + + ++ mKIAA1534 284 ATQEKSVLEEAQRQRAREHQQSLTPWKPQLFlldpltQEWRYRYEDLSPW 333 kkekpeaddkerkqkgslyepkwfvpsgqpvtdKeklyikarkeyWefrK + +k a+ ++ l++ + + +++ + + +k +++ + rK mKIAA1534 334 DPLKDIAQYEQDGILHTLQRETMSGQ--TTFLGSPDSRHKRPSSDRRLRK 381 k<-* mKIAA1534 382 A 382 //