hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpg/mpg00841/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1531  ( 1214 res)   mpg00841

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRRCT    Leucine rich repeat C-terminal domain           34.8    1.1e-05   1
LRR_TYP  Leucine-rich repeats, typical (most populate    32.8    4.5e-05   2
IG       Immunoglobulin                                  26.4      0.004   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_TYP    1/2       9    32 ..     1    24 []    27.8   0.0015
LRR_TYP    2/2      33    56 ..     1    24 []     5.6       86
LRRCT      1/1      68   118 ..     1    55 []    34.8  1.1e-05
IG         1/1     131   224 ..     1    58 []    26.4    0.004

Alignments of top-scoring domains:
LRR_TYP: domain 1 of 2, from 9 to 32: score 27.8, E = 0.0015
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L++L++LdLsnN++  L +++Fqg   
   mKIAA1531     9    LGELKRLDLSNNRIGCLTSETFQG    32   

LRR_TYP: domain 2 of 2, from 33 to 56: score 5.6, E = 86
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      Lp L +L+ s+N  +sL pg+F+    
   mKIAA1531    33    LPRLLRLNISGNIYSSLQPGVFDE    56   

LRRCT: domain 1 of 1, from 68 to 118: score 34.8, E = 1.1e-05
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                        + CDC+LrwLl+w ++     lq ++ +++Ca+P++l+    l++
   mKIAA1531    68    EFLTCDCRLRWLLPWARN---HSLQLSE-RTLCAYPSALHA-HALSS 109  

                   lp.sefsCp<-*
                   l +s   C+   
   mKIAA1531   110 LQeSQLRCE    118  

IG: domain 1 of 1, from 131 to 224: score 26.4, E = 0.004
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                      + +++v  G+++ ++C+as  +++++i+Wy+++ +  ++ + +    
   mKIAA1531   131    SLrQVVFQGDRLPFQCsASylgndtRIHWYhngapmesdeqagivla 177  

                   .............LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLt
                    +  ++ +  ++ Lt++++ +  s   G+  C +++  g++s+   +++ 
   mKIAA1531   178 enlihdctfitseLTLsHIGVWAS---GEWECSVStvQGNTSK--KVEIV 222  

                   Vl<-*
                   Vl   
   mKIAA1531   223 VL    224  

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