hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mth/mth01821/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1528  ( 276 res)   mth01821

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           28.8    0.00012   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1      66   126 ..     1    50 []    28.8  0.00012

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 66 to 126: score 28.8, E = 0.00012
                   *->CrICleelkepsnd.............fplilpCgHsGslkyfCrsC
                      C IC+e l+ +s +++ ++++  ++  +  ++ C H+     f+  C
   mKIAA1528    66    CIICMEKLAVASGYsdmtdskalgpmvVGRLTKCSHA-----FHLLC 107  

                   lerwlss...sgnttCplC<-*
                   l+ ++ +++++g+ +Cp C   
   mKIAA1528   108 LLAMYCNgnkDGSLQCPSC    126  

//