hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg20876/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1527 ( 999 res) mbg20876 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Alpha_kinase Alpha-kinase family 399.0 4.7e-116 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Alpha_kinase 1/1 775 983 .. 1 241 [] 399.0 4.7e-116 Alignments of top-scoring domains: Alpha_kinase: domain 1 of 1, from 775 to 983: score 399.0, E = 4.7e-116 *->stskWtqsevlvkleklstpfakGalReAfrvkklsqedDilKlgal ++++Wt++e+ v+l++++++++kG +R+Af+v+ l+q mKIAA1527 775 KSELWTAQETVVYLGDYLKVKKKGKQRNAFWVHYLHQ---------- 811 fivksdlkevgryvsKiykeqtsrhlyFeDVqmQmaAkkwaeeFNqlKae ++++gryv+K+yke ++++++F+DV++Qm+A+++++eFN++++e mKIAA1527 812 ------EETLGRYVGKEYKERKGLRHHFTDVERQMTAQHYVTEFNKRLYE 855 qNiPpkkidflqscvveLiDrtgsgnGqgplcsiEpyieGeFrKYNnNsG q iP+++++ +++++++L+Drt++g ++s+Epyi+GeF+K++nN++ mKIAA1527 856 QKIPTQIFYVPSTILLILEDRTIKG-----CISVEPYILGEFVKLSNNTK 900 denKEvfvstddaretpQAFSHFTYErSnhqllVvDlQGVgtGNGKGLdl v++ +++a+e+++A++HF+YE+Snh+++VvDlQG++tGNGKGL++ mKIAA1527 901 -----VVKNEYKATEYGLAYGHFSYEFSNHRDVVVDLQGWVTGNGKGLIY 945 yTDPQIHTvdpKrSyGtgFGdgNLGerGiakFfNNatHkCNaiC<-* +TDPQIH+vd ++ ++N+G+rGi++FfNN++ CN+iC mKIAA1527 946 LTDPQIHSVD------QKDVTTNFGKRGIFYFFNNQHASCNEIC 983 //