hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03417/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1526  ( 869 res)   mbh03417

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.     199.8    2.5e-55   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/3     114   186 ..     1    80 []    85.1  8.6e-21
PDZ        2/3     252   324 ..     1    80 []    78.4  9.1e-19
PDZ        3/3     786   866 ..     1    80 []    45.6  6.7e-09

Alignments of top-scoring domains:
PDZ: domain 1 of 3, from 114 to 186: score 85.1, E = 8.6e-21
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                      +glGfsi+g+++++ gi+vs v+pGs A+k G      L+vGD+Il+
   mKIAA1526   114    EGLGFSIRGgsehgvGIYVSLVEPGSLAEKEG------LRVGDQILR 154  

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   VN+ +s+  +th+eav++lk+++      k++L v   g   
   mKIAA1526   155 VND-KSLARVTHAEAVKALKGSK------KLVLSVYSAG    186  

PDZ: domain 2 of 3, from 252 to 324: score 78.4, E = 9.1e-19
                   *->gglGfsivg......gifvssvvpGspAakaGrkslglLkvGDvIle
                       +lG++i+g+ + + gi++++v pGs A+ +G      LkvGD+Ile
   mKIAA1526   252    RSLGLTIRGgaeyglGIYITGVDPGSEAESSG------LKVGDQILE 292  

                   VNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   VNG  s  +  h+eav+llk+++      ++ Ltv+  g   
   mKIAA1526   293 VNG-RSFLNILHDEAVKLLKSSR------HLILTVKDVG    324  

PDZ: domain 3 of 3, from 786 to 866: score 45.6, E = 6.7e-09
                   *->gglGfsivg.......gifvssvvpGspAakaGrkslglLkvGDvIl
                      + lG+ i g+ +++++   ++ +++G+ A+ +G      LkvG vIl
   mKIAA1526   786    ATLGIAIEGgantrqpLPRIVTIQRGGSAHNCGQ-----LKVGHVIL 827  

                   eVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   eVNG + ++g+ h ea++++ +a + +  + ++++v   +   
   mKIAA1526   828 EVNG-QTLRGKEHKEAARIIAEAFKTKERDYIDFLVTEFN    866  

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