hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03417/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1526  ( 869 res)   mbh03417

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      PDZ domain (Also known as DHR or GLGF)         161.6    1.3e-44   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/3     104   183 ..     1    82 []    85.3  1.3e-21
PDZ        2/3     243   321 ..     1    82 []    65.7  9.9e-16
PDZ        3/3     778   853 ..     1    82 []    20.0    0.016

Alignments of top-scoring domains:
PDZ: domain 1 of 3, from 104 to 183: score 85.3, E = 1.3e-21
                   *->evtlekevkrgglGfsikggsdk..givvsevlpGsgaAeagGrLke
                      +v+l +   ++glGfsi+ggs+++ gi+vs v pG + Ae+ G L++
   mKIAA1526   104    LVSLRRAKAHEGLGFSIRGGSEHgvGIYVSLVEPG-SLAEKEG-LRV 148  

                   GDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   GDqIl vN+++++ ++h++av+alkgs+  ++ L +    
   mKIAA1526   149 GDQILRVNDKSLARVTHAEAVKALKGSK--KLVLSVY    183  

PDZ: domain 2 of 3, from 243 to 321: score 65.7, E = 9.9e-16
                   *->evtlekevkrgglGfsikggsdk..givvsevlpGsgaAeagGrLke
                      +v l  +  + +lG++i+gg + + gi+++ v pG + Ae +G Lk+
   mKIAA1526   243    KVNLVLG-DGRSLGLTIRGGAEYglGIYITGVDPG-SEAESSG-LKV 286  

                   GDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   GDqIl+vNG+++ n+ h++av++lk+s+  ++ Lt++   
   mKIAA1526   287 GDQILEVNGRSFLNILHDEAVKLLKSSR--HLILTVK    321  

PDZ: domain 3 of 3, from 778 to 853: score 20.0, E = 0.016
                   *->evtlekevkrgglGfsikggsdk...givvsevlpGsgaAeagGrLk
                      +v++ k  +   lG+ i gg + +++   +  +++G g+A+  G Lk
   mKIAA1526   778    LVRVRK--SAATLGIAIEGGANTrqpLPRIVTIQRG-GSAHNCGQLK 821  

                   eGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   +G++Il+vNGq +++ +h +a+ ++ ++       + +   
   mKIAA1526   822 VGHVILEVNGQTLRGKEHKEAARIIAEA------FKTK    853  

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