hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05802/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1525  ( 568 res)   mbg05802

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      Broad-Complex, Tramtrack and Bric a brac        89.0    5.5e-22   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/2     145   247 ..     1   114 []    60.1  2.9e-13
BTB        2/2     250   400 ..     1   114 []    29.7   0.0004

Alignments of top-scoring domains:
BTB: domain 1 of 2, from 145 to 247: score 60.1, E = 2.9e-13
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      +Dv l+ ++         + f++  H+a+Laa+   +p+Fk+l++s+
   mKIAA1525   145    TDVDLIFQE---------TCFPV--HRAILAAR---CPFFKTLLSSs 177  

                   .....ieldDeall.ievspeaFralLnflYt.kldlpeedvenveelLe
                   ++ + +++ D  + +  ++ + F alL++lYt+++ + ++ ++nv+ l +
   mKIAA1525   178 peygaEIIMD--IStAGIDMPMFSALLHYLYTgEFGMEDSRFQNVDILVQ 225  

                   lAdfldSYGqip.lvelCeefllknl<-*
                   l + +    + p+  ++  + l ++    
   mKIAA1525   226 LSEEF----GTPnPLDVDMRGLFDYM    247  

BTB: domain 2 of 2, from 250 to 400: score 29.7, E = 0.0004
                   *->cDvtlvvggdlggd...........naegkkfhasqHkavLaacrrd
                       Dv+l  +     d++  +  ++++n   ++++a  Hka+ +a+   
   mKIAA1525   250    YDVVLSFSS----DselveafggnqNCLDEELKA--HKAIISAR--- 287  

                   SpyFkalfes..................ieldDeallievspeaFralLn
                   Sp+F++l+  + +++++ ++++ +++++i+ld++     +  +  + +L+
   mKIAA1525   288 SPFFRNLLQRrirtgeeitdrtlrtptrIILDES----IIPKKYAKVILH 333  

                   flYt.kldlpeed........................venveelLelAdf
                    +Yt+ +dl+  ++ +++ ++ ++ +    ++++ ++ e+++el ++A f
   mKIAA1525   334 CMYTdVVDLSV-LhcspsvgslsevqalvagkpnmtrAEEAMELYHIALF 382  

                   ldSYGqip.lvelCeefllknl<-*
                   l    +   l++ Ce+++ +++   
   mKIAA1525   383 L----EFNmLAQGCEDIIAESI    400  

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