hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg05802/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1525  ( 568 res)   mbg05802

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BTB      BTB/POZ domain                                  41.9    1.4e-08   2
BACK     BTB And C-terminal Kelch                       -12.5      0.038   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/2     139   241 ..     1   135 []    33.3  5.7e-06
BTB        2/2     243   400 ..     1   135 []    10.0   0.0028
BACK       1/1     405   483 ..     1   103 []   -12.5    0.038

Alignments of top-scoring domains:
BTB: domain 1 of 2, from 139 to 241: score 33.3, E = 5.7e-06
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      +++ ++     DV L  ++          f++H+a+Laa+ p+Fk+l
   mKIAA1525   139    YEDKYCT----DVDLIFQE--------TCFPVHRAILAARCPFFKTL 173  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   +++ ++   + +e+ +   i   +++   f alL+++Ytge  ++ ++  
   mKIAA1525   174 LSSSPE---YGAEIIMD--ISTAGIDMPMFSALLHYLYTGEFGMEDSR-- 216  

                   PssckseenvedlLalAadllqipslvdkCeefliksl<-*
                          +nv+ l +l  + +  p          + +    
   mKIAA1525   217 ------FQNVDILVQLS-EEFGTPN------PLDVDMR    241  

BTB: domain 2 of 2, from 243 to 400: score 10.0, E = 0.0028
                   *->lnelreqgelcDVtLvvgdgsgr......yd.v.gkkfkAHKavLaa
                      l + ++     DV+L     s+  +  ++  +  ++++kAHKa+ +a
   mKIAA1525   243    LFDYMCYY---DVVLSFSSDSELveafggNQnClDEELKAHKAIISA 286  

                   cSpYFkalFtgqfkesiteeessvs.......seieledvspedfealLe
                   +Sp+F++l+    +   t ee++ ++ +++++++++ + ++ +  + +L+
   mKIAA1525   287 RSPFFRNLLQRRIR---TGEEITDRtlrtptrIILDESIIPKKYAKVILH 333  

                   fiYtgelsitqdqksPs..sc.k............seenvedlLalAadl
                   ++Yt+ ++++    sPs +s ++ +    ++++ ++ e +++l ++A  +
   mKIAA1525   334 CMYTDVVDLSVLHCSPSvgSLsEvqalvagkpnmtRAEEAMELYHIA-LF 382  

                   lqipslvdkCeefliksl<-*
                   l+  +l + Ce+ + +s+   
   mKIAA1525   383 LEFNMLAQGCEDIIAESI    400  

BACK: domain 1 of 1, from 405 to 483: score -12.5, E = 0.038
                   *->CLgIrrfAda.ygceeLaeaAdrfilqnFleVakseEFlqLskeqLi
                       ++++  + ++yg + ++ +A  f+++  ++V+ s+ F +Lsk++L+
   mKIAA1525   405    LIAVLKWSSHpYGSKWVHRQAVHFLCEELSQVMTSDVFYELSKDHLL 451  

                   elLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspk
                   + ++sD L  +sE+++++ +++W  h+                       
   mKIAA1525   452 TAIQSDYL-QASEQDILKYLIKWGEHQ----------------------- 477  

                   yLlevve<-*
                    L+++++   
   mKIAA1525   478 -LMKRIA    483  

//