hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11207/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1521  ( 1446 res)   mpm11207

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
VPS9     Domain present in VPS9                          96.7    2.6e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
VPS9       1/1    1341  1446 .]     1   120 []    96.7  2.6e-24

Alignments of top-scoring domains:
VPS9: domain 1 of 1, from 1341 to 1446: score 96.7, E = 2.6e-24
                   *->FveieqielkflqlskmYSPsdKikcLLrackviytlletqsKgeva
                      +++++q e   +  +k  +P+dK+ c+Lr c  i +ll +     v 
   mKIAA1521  1341    PWPSAQSEIRTISAYK--TPRDKVQCILRMCSTIMNLLSLANEDSVP 1385 

                   GADdFlPvLiYvIikcdprdLllnveYieeflepslltGeegYYLtsLeA
                   GADdF PvL++v+ik++p+ Ll+ v+Yi+ f + s l+Gee+Y +  + A
   mKIAA1521  1386 GADDFVPVLVFVLIKANPPCLLSTVQYISSF-YASCLSGEESYWWMQFTA 1434 

                   ALafikgLteadalilspedeee<-*
                   A++fik++           d ++   
   mKIAA1521  1435 AVEFIKTI-----------DDRK    1446 

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