hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm11207/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1521  ( 1446 res)   mpm11207

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
VPS9     Vacuolar sorting protein 9 (VPS9) domain       194.6    1.5e-54   1
RasGAP   GTPase-activator protein for Ras-like GTPase    -1.5      1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RasGAP     1/1     162   364 ..     1   231 []    -1.5    1e-05
VPS9       1/1    1342  1444 ..     1   120 []   194.6  1.5e-54

Alignments of top-scoring domains:
RasGAP: domain 1 of 1, from 162 to 364: score -1.5, E = 1e-05
                   *->LvktllqkEIeSkaddpttlfRgNslaskmleqyf....RrarGneY
                      ++  l+  E++  +d p  l+R+ ++a  +l  +f+++ ++a    +
   mKIAA1521   162    VLRYLIEFELK-ESDNPRRLLRRGTCAFSILFKLFseglFSA--KLF 205  

                   LrktL.rpvLkeIieskdWqHLscEiDPlkvykklVNqgelstsE.....
                   L  tL+ p+ +  +e+ d     +E+DP k+             E+ ++ 
   mKIAA1521   206 LTATLhEPIMQLLVEDED----HLETDPNKL------------IErfspa 239  

                   ldydlTnEevld..eeekseaieenlrnLlkyteklleaItsSsdefPpe
                       l  E  +d+   ++ e +++n + L+++++k++  +      fP  
   mKIAA1521   240 QQEKLFGEKGSDrfRQKVQEMVDSNEAKLVALVNKFIGYLKQNTYCFPHS 289  

                   LryIckclrqsa.cekFPdnatVKEKKENKKSVVSqRFeqvilsavGgfv
                   Lr+I    ++ ++c+  ++ +                   +       ++
   mKIAA1521   290 LRWIVSQMYKTLsCVDRLEVG-------------------EVRAMCTDLL 320  

                   FLRFinPAIvsPdlfnIidkspsaqaTTDqrR.tLtliAKviQslANg<-
                      Fi+PA v+P   +Ii++ p  ++    +R +L  +   +Q lA    
   mKIAA1521   321 LACFICPAVVNPEQYGIISDAPINEV----ARfNLMQVGRLLQQLAMT   364  

                   *
                    
   mKIAA1521     -   -    

VPS9: domain 1 of 1, from 1342 to 1444: score 194.6, E = 1.5e-54
                   *->veeakqeLrelqYeyySPrdKlqcllrccklIfnalknakgeneaPT
                      +++a++e+r+++ +y++PrdK+qc+lr+c++I+n+l++a++++    
   mKIAA1521  1342    WPSAQSEIRTIS-AYKTPRDKVQCILRMCSTIMNLLSLANEDS---- 1383 

                   DPmCGYRGepsADdfLPlLiYvilkanpphLlsnieYisrFlnpPisrlL
                           +p+ADdf+P+L++v++kanpp+Lls+++Yis+F++   s +L
   mKIAA1521  1384 --------VPGADDFVPVLVFVLIKANPPCLLSTVQYISSFYA---S-CL 1421 

                   sGEegYYLTsLeaAlaFIkslde<-*
                   sGEe+Y++++++aA++FIk++d+   
   mKIAA1521  1422 SGEESYWWMQFTAAVEFIKTIDD    1444 

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