hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mej/mej02266/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1518 ( 587 res) mej02266 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- ANK ankyrin repeats 94.6 1.2e-23 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ANK 1/5 402 432 .. 1 30 [] 24.9 0.011 ANK 2/5 436 469 .. 1 30 [] 4.2 1.3e+03 ANK 3/5 474 503 .. 1 30 [] 31.9 8.6e-05 ANK 4/5 507 537 .. 1 30 [] 22.3 0.067 ANK 5/5 541 569 .. 1 30 [] 14.2 19 Alignments of top-scoring domains: ANK: domain 1 of 5, from 402 to 432: score 24.9, E = 0.011 *->dGrTpLHlAaengnlevvklLldkga.dina<-* +G+T+LH+ +++ n vv+ Lld+g+ +++ mKIAA1518 402 NGNTALHYSVSHANFPVVRQLLDSGVcHVDK 432 ANK: domain 2 of 5, from 436 to 469: score 4.2, E = 1.3e+03 *->dGrTpLHlAaen.....gnlevvklLldkgadina<-* G++p++l a + ++++++e++ L + g ++na mKIAA1518 436 AGYSPIMLTALAtlktqDDIETILQLFRLG-NVNA 469 ANK: domain 3 of 5, from 474 to 503: score 31.9, E = 8.6e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* G+T+L+lA+++g+++vv++Ll ad+n+ mKIAA1518 474 AGQTALMLAVSHGRVDVVRALLACEADVNI 503 ANK: domain 4 of 5, from 507 to 537: score 22.3, E = 0.067 *->dGrTpLHlAaengnlevvklLldkga.dina<-* dG T+L++A+e+g++e+ lLl di + mKIAA1518 507 DGSTALMCACEHGHKEITGLLLAVPScDISL 537 ANK: domain 5 of 5, from 541 to 569: score 14.2, E = 19 *->dGrTpLHlAaengnlevvklLldkgadina<-* dG T+L++A g+ e++ +L ++ +i + mKIAA1518 541 DGSTALMVALDAGQSEIASMLYSRM-NIKC 569 //