hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mej/mej02266/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1518 ( 587 res) mej02266 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Ank Ankyrin repeat 98.9 1e-25 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Ank 1/4 402 432 .. 1 33 [] 21.3 0.023 Ank 2/4 474 506 .. 1 33 [] 42.5 9.6e-09 Ank 3/4 507 540 .. 1 33 [] 26.0 0.00089 Ank 4/4 541 570 .. 1 33 [] 13.2 2.5 Alignments of top-scoring domains: Ank: domain 1 of 4, from 402 to 432: score 21.3, E = 0.023 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T+LH+ +++ n vv+ Ll+ ++++d+ mKIAA1518 402 NGNTALHYSVSHANFPVVRQLLD--SGVCHVDK 432 Ank: domain 2 of 4, from 474 to 506: score 42.5, E = 9.6e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L+lA+++g+++vv+ Ll + Ad+n+qd mKIAA1518 474 AGQTALMLAVSHGRVDVVRALLACEADVNIQDE 506 Ank: domain 3 of 4, from 507 to 540: score 26.0, E = 0.00089 *->dGfTPLHlAalrgnlevvklLls.qGAdlnaqdd<-* dG T+L++A+++g++e+ lLl +d+ ++d+ mKIAA1518 507 DGSTALMCACEHGHKEITGLLLAvPSCDISLTDR 540 Ank: domain 4 of 4, from 541 to 570: score 13.2, E = 2.5 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG T+L++A g+ e++++L s n++ mKIAA1518 541 DGSTALMVALDAGQSEIASMLYS---RMNIKCS 570 //