hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp07073/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1517  ( 937 res)   mbp07073

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   105.3    7.2e-27   1
HELICc   helicase superfamily c-terminal domain          63.1    3.5e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1      33   225 ..     1   219 []   105.3  7.2e-27
HELICc     1/1     341   456 ..     1    86 []    63.1  3.5e-14

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 33 to 225: score 105.3, E = 7.2e-27
                   *->gf.klrpyQkeaipwllegrdvilaapTGsGKTlafllpllellkkg
                      +  +  +  +++++++ e+  vi++++TGsGKT++ +++l e+++++
   mKIAA1517    33    LKlPILAEEQAIMEAVAEHPIVIVCGETGSGKTTQVPQFLYEAGYSS 79   

                   kplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvgl
                            +  + v+ P+r++a  + ++++k++  ++       +vv++
   mKIAA1517    80 --------EDSIIGVTEPRRVAAVAMSQRVAKEMNLSH-------RVVSY 114  

                   ygG.sktkekeqlrklksgktdilvtTpgrLldll.ngkglsl.nldlvi
                     +               + t+i ++T g+Ll+++++++  +l ++++vi
   mKIAA1517   115 QIRyEG---------NVTEETRIKFMTDGVLLKEIqKDF--LLlKYKVVI 153  

                   lDEaHrlldmgsggdhgfgdqle.llkrl.......pknrqrlllSATpp
                   +DEaH+++         ++d+l++ll+r+   + +++  +++l++SAT+ 
   mKIAA1517   154 IDEAHERS--------VYTDILLgLLSRIvalrakrHLPLKLLIMSATLR 195  

                   ..eienllklflnlpelfpnpvfisvgftlepieqf<-*
                    ++   +++lf   p     ++ + +    +p++++   
   mKIAA1517   196 veDFTQNQRLFTTPP----PVIKVESR--QFPVTVH    225  

HELICc: domain 1 of 1, from 341 to 456: score 63.1, E = 3.5e-14
                   *->delaelLkellkd............pgikvarlHGglsqeeReeile
                      + l   L   l+d++ +++++++ +  + v++l++ l +e++ ++++
   mKIAA1517   341    EALGSDLDLDLGDseanegeqpdasLPLHVLPLYSLLAPEKQAQVFK 387  

                   kFrkgkikvLvaTdvaerGlDipgvdlVInydl.................
                     ++g + ++vaT+vae++l+ipg+++V++++  +++  ++ ++ ++ + 
   mKIAA1517   388 PPPEGTRLCVVATNVAETSLTIPGIKYVVDCGKvkkryydrvtgvssfrv 437  

                   .pwspasyiQRiGRaGRaG<-*
                   ++ s as+ QR+GRaGR     
   mKIAA1517   438 tWVSQASADQRAGRAGRTE    456  

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