hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbp/mbp07073/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1517 ( 937 res) mbp07073 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- HA2 Helicase associated domain (HA2) 90.5 3.3e-23 1 DUF1605 Domain of unknown function (DUF1605) 88.3 1.6e-22 1 Helicase_C Helicase conserved C-terminal domain 52.1 1.2e-11 1 DEAD DEAD/DEAH box helicase 31.4 5.5e-07 1 ResIII Type III restriction enzyme, res subunit -30.6 0.11 1 FtsK_SpoIIIE FtsK/SpoIIIE family -48.3 0.72 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ResIII 1/1 35 196 .. 1 244 [] -30.6 0.11 FtsK_SpoIIIE 1/1 18 198 .. 1 284 [] -48.3 0.72 DEAD 1/1 36 199 .. 1 266 [] 31.4 5.5e-07 Helicase_C 1/1 365 456 .. 1 76 [] 52.1 1.2e-11 HA2 1/1 516 639 .. 1 124 [] 90.5 3.3e-23 DUF1605 1/1 673 791 .. 1 140 [] 88.3 1.6e-22 Alignments of top-scoring domains: ResIII: domain 1 of 1, from 35 to 196: score -30.6, E = 0.11 *->iklRpyQeeAierllesiekgelrlatglkdkdkkkrglivmATGsG + + e++ e ++ ++++ TGsG mKIAA1517 35 LPILAEEQAIMEAVAE------------------HPIVIVCGETGSG 63 KTltaakiliarllkkqqklkhg.rid.d.s..kvLFlVprkdLleQale KT + + ++ + ++ i + + +++v ++ ++ +++ + mKIAA1517 64 KTTQVPQ-FLYEAGY-----SSEdSIIgVtEprRVAAVAMSQRVAKEMNL 107 eFtkfeskkkkef.knpgvdkklkvltdnqkdsalegkskkndieiiftt +++++++++v ++++i f+t mKIAA1517 108 SH----------RvVSYQIRYEGNV---------------TEETRIKFMT 132 iQkLskalklgkendeeekskstesvvglrlavesleflldefdliIiDE L k+ ++++fll ++ ++IiDE mKIAA1517 133 DGVLLKE--------------------------IQKDFLLLKYKVVIIDE 156 aH.rssaktksakededatk.l.e.v.yrkilekwelelnkkyfkpaflL aH+rs + + l+ ++ ++ + k++ p +lL mKIAA1517 157 AHeRSVYTD----------IlLgLlSrIVALRA--------KRHLPLKLL 188 GlTATPer<-* ++AT mKIAA1517 189 IMSATLRV 196 FtsK_SpoIIIE: domain 1 of 1, from 18 to 198: score -48.3, E = 0.72 *->elkelldskafrdsrsrltialgkdivsgnpvvadlvkmpvdagprH ++ ++++ + + +r l+i l +++ + ++++p mKIAA1517 18 VFIPVNRTPEMQEERLKLPI-LAEEQ----AIMEAVAEHP------I 53 lLiaGatGSGKSvflntlilSlaarhsPeeVrlyliDpKggeLapledlp ++++G+tGSGK++ + ++ ++ + s e+ + p+ mKIAA1517 54 VIVCGETGSGKTTQVPQFLYEAGY--SSEDSIIGVTEPR----------- 90 hllsvlvavatdpekalralreLveEMerRyerallrqlgvrsieeykyn +++v a+ + k +++ ++v + Rye + + +++ + ++ ++ mKIAA1517 91 RVAAV--AMSQRVAKEMNLSHRVVSY-QIRYEGNVTEETRIKFMTDGVLL 137 eeiaeailggfgdvdlviDnydeLaeenlLervtsLknqGlsygvhvmat +ei +++l mKIAA1517 138 KEIQKDFLL----------------------------------------- 146 agrwleelpyivvivDeraeLmlaagkdselRrsrvedalaRlaqmkeel l y vvi+De +e ++++ + + ++l+R+++++ mKIAA1517 147 -------LKYKVVIIDEAHE-RSVYTDI-------LLGLLSRIVALR--- 178 tfaRlnlDdaaGiHlllAtpeldaqpdVvavrqRpsv<-* a l + + + At R + mKIAA1517 179 --AKRHL--PLKLLIMSAT-------------LRVED 198 DEAD: domain 1 of 1, from 36 to 199: score 31.4, E = 5.5e-07 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ptpiQaeaipaileneGfalredvlssggmdrlvlqApTGSGKTlaf p ++ai ++ + v+ v +++TGSGKT+ mKIAA1517 36 PILAEEQAIMEAVAEHP-----IVI--------V-CGETGSGKTTQV 68 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx llPilygqrllkgpksarggksqgggknergfkidspqalvlaPTreLae + ++ ++s + v P+r a mKIAA1517 69 PQFLY--EAGYSSEDS---------------------IIGVTEPRRVAAV 95 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxx Qiyeelkkllkilalsplgvnellrrigtglrvavl.slyGGsslkdqld + +++ k ++ + rv+ +++y mKIAA1517 96 AMSQRVAKEMN-----------------LSHRVVSYqIRYE--------G 120 RF xx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx kl.rgkreskggpdIvvgTPgrLldllrngrinikievssertgklklkn + +++I +T g Ll ++++ + l + mKIAA1517 121 NVtE-------ETRIKFMTDGVLLKEIQKD---------------FLLLK 148 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx lkhlkllVlDEahrlldmghgFgedleeilrrlprneplraqllgtilHq k +++DEah+ + + l +l+r+ lra + mKIAA1517 149 Y---KVVIIDEAHERSVY----TDILLGLLSRIVA---LRA--------K 180 RF xxxxx xxxxxxxxxxxxxxxx kpniQ.tllfSATlpprevedl<-* ++ + ++l +SATl ed+ mKIAA1517 181 RHLPLkLLIMSATL-RV--EDF 199 Helicase_C: domain 1 of 1, from 365 to 456: score 52.1, E = 1.2e-11 *->ll.epgikvarlhGglsqeeReeilekFrsgkskvLvaTdvaarGlD l+++ v++l++ l +e++ ++++ +g++ ++vaT+va+++l+ mKIAA1517 365 SLpLH---VLPLYSLLAPEKQAQVFKPPPEGTRLCVVATNVAETSLT 408 ipdvnlVInydl..................pwnpesyiQRiGRaGRaG<- ip++ +V++++ +++ ++ ++ ++ + ++ + +s QR+GRaGR mKIAA1517 409 IPGIKYVVDCGKvkkryydrvtgvssfrvtWVSQASADQRAGRAGRTE 456 * mKIAA1517 - - HA2: domain 1 of 1, from 516 to 639: score 90.5, E = 3.3e-23 *->aAlelLyeLgAlr.....Dsdge.........LTsplGrlmarlPld aA+elL++LgAl+ ++++ ++ + ++ + ++T +lGr m+++P++ mKIAA1517 516 AAEELLVALGALQappkqERMKKlqmsqlscpIT-ALGRTMSTFPVA 561 PrLgkmLvllaalfgcldealiiaaiLsvrgspfvntGvDRdaqrlpldk Pr++kmL +l++++gcl++++ i+a+++v +++f++ + ++ mKIAA1517 562 PRYAKML-ALSQQHGCLPYTIAIVAAMTV-RELFEE----------LDRP 599 sekakrWNiSrdlarakf.e.g.rsl.eksars.r.lts.lsDhlall<- + +k a+++ ++ r++++k +++ + + +l+D+++ll mKIAA1517 600 AASEK--------ELAELkGrRaRVAqMKRTWAgQgPSLkLGDLMVLL 639 * mKIAA1517 - - DUF1605: domain 1 of 1, from 673 to 791: score 88.3, E = 1.6e-22 *->kQLlrilkrlglp.........lnsssgdiellrkailaGlypNvAr QL +++ + + +++ +++++ + lr++ +aGl +++Ar mKIAA1517 673 GQLTTAVNAVCPEaglfldpkmQPPTESQVTYLRQIMAAGLGDHLAR 719 r.......esdrggkgsYktlr..svrlpvrkkanisdvkdgeekgfktn r ++++ +++ k++Ykt + + mKIAA1517 720 RvqsedllDPK--WKNAYKTPLldDP------------------------ 743 dgnVsiHPsSvLfntkkkppkwvvytelvetskkgdgskvYardvtaisp V+iHPsSvLf k p++vvy+e+vet+k +Y++ v+ ++ mKIAA1517 744 ---VFIHPSSVLF---KELPEFVVYQEIVETTK------MYMKGVSTVEI 781 ewllllapgki<-* w+ l p ++ mKIAA1517 782 QWIPSLLP-SY 791 //