hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mph/mph00995/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1515  ( 660 res)   mph00995

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
UCH      Ubiquitin carboxyl-terminal hydrolase          -25.0    0.00034   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
UCH        1/1       1   261 [.     1   273 []   -25.0  0.00034

Alignments of top-scoring domains:
UCH: domain 1 of 1, from 1 to 261: score -25.0, E = 0.00034
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl
                                                    y+ +++y s        
   mKIAA1515     1    ----------------------------IIYMDRYMYKS-------- 11   

                RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   gskgsllcaladLfnalqsg.yksvvpsplkflqfkttlgkineefsgym
                                 ++l  +++ sv + +++                   
   mKIAA1515    12 --------------KELIRSkRESVRKLKEE------------------- 28   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   QqDAhEFllfLLdgLhedlnrvnkkpytepesdkrpdkaaeawknhslrn
                           + L ++L++  +                              
   mKIAA1515    29 -------IQVLQQKLERYVKY----------------------------- 42   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eslitdlFqGqlesrlkisrLPpiLiihLKRFkydgetgmnkKindkVef
                                  +             +RF           + + +ef
   mKIAA1515    43 --------------GS-----------GPSRFPLPDM------LKYVIEF 61   

                RF xxxxxxxxxxxxx                                     
                   PleLdlssyctae.....................................
                     + + s+ c++++ ++ + + ++ + + ++ ++++++++++ +++ +++
   mKIAA1515    62 ASTKPASESCLSGsaehvtlplpsvhcpisdltpkessspescsqnagst 111  

                RF                                                   
                   ..................................................
                    +++++  +++++ +++ ++ +++ +++ ++ + + ++++ +  ++  + 
   mKIAA1515   112 fsspedalpssegmngpftslhssletpappaprtvtdeemnfvktclqr 161  

                RF                                 xxxxxxxxxxxxxxxxxx
                   ................................pplkYeLyaVvvHsGssl
                     ++ +++ ++ ++  +++++  ++   ++  ++  Y+L+aV+vH G ++
   mKIAA1515   162 wrseieqdiqdlkncissstkaieqmycdpllRQVPYRLHAVLVHEG-QA 210  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx      xxxxxxxx
                   sgGHYiayikkkkknnkWykfDDekVsevseeevle......rsssAYiL
                   s GHY+ayi+ +  ++ W+k++D +V+e+s ee ++++ ++ r+ sAY L
   mKIAA1515   211 SAGHYWAYIY-NQPRQIWLKYNDISVTESSWEELERdsygglRNVSAYCL 259  

                RF xx   
                   FY<-*
                   +Y   
   mKIAA1515   260 MY    261  

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