hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbf/mbf03631/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1514 ( 1994 res) mbf03631 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- FN3 Fibronectin type 3 domain 553.2 1e-161 13 IG Immunoglobulin 155.8 4.6e-42 4 IGc2 Immunoglobulin C-2 Type 145.3 6.4e-39 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- IGc2 1/4 50 113 .. 1 56 [] 24.8 0.012 IG 1/4 43 127 .. 1 58 [] 41.0 1.6e-07 IGc2 2/4 143 209 .. 1 56 [] 44.5 1.4e-08 IG 2/4 137 220 .. 1 58 [] 39.1 6e-07 IGc2 3/4 236 304 .. 1 56 [] 54.0 1.9e-11 IG 3/4 230 315 .. 1 58 [] 42.8 4.6e-08 IGc2 4/4 330 398 .. 1 56 [] 22.1 0.027 IG 4/4 324 409 .. 1 58 [] 33.6 2.6e-05 FN3 1/13 412 496 .. 1 69 [] 39.5 4.5e-07 FN3 2/13 512 598 .. 1 69 [] 45.8 5.8e-09 FN3 3/13 614 702 .. 1 69 [] 32.0 8.2e-05 FN3 4/13 717 799 .. 1 69 [] 55.8 5.6e-12 FN3 5/13 815 902 .. 1 69 [] 36.4 3.8e-06 FN3 6/13 919 1006 .. 1 69 [] 54.0 2e-11 FN3 7/13 1022 1107 .. 1 69 [] 42.0 8.2e-08 FN3 8/13 1123 1206 .. 1 69 [] 49.6 4.2e-10 FN3 9/13 1222 1307 .. 1 69 [] 54.0 1.9e-11 FN3 10/13 1324 1430 .. 1 69 [] 42.0 8.2e-08 FN3 11/13 1446 1531 .. 1 69 [] 50.2 2.7e-10 FN3 12/13 1546 1633 .. 1 69 [] 52.6 5e-11 FN3 13/13 1647 1731 .. 1 69 [] 38.1 1.2e-06 Alignments of top-scoring domains: IGc2: domain 1 of 4, from 50 to 113: score 24.8, E = 0.012 *->leGqsVtLtCpasgdpvpn..ItWlk.gkplp.....sgstLtiknv Vt++C a+++p +I W+k+g pl+++ ++++ +Lti n mKIAA1514 50 AGTSEVTMECVANARPLIKlhIVWKKdGAPLSsgisdYNRRLTIANP 96 sleDsGlYtCvArNsvg<-* +++D+G+Y+C+A + + mKIAA1514 97 TVSDAGYYECEAMLRSS 113 IG: domain 1 of 4, from 43 to 127: score 41.0, E = 1.6e-07 *->pp.vtvke.GesvtLtC.as.......titWy............... p++++v+++ + vt++C a+ + + +i W++++ + +++ ++ ++ mKIAA1514 43 PKnTSVVAgTSEVTMECvANarpliklHIVWKkdgaplssgisdynr 89 .LtI.nvtpeDsesgGtYtCaat.....sgsasseqgttLtVl<-* +LtI n t++D+ G Y C+a ++++ ++ g++L+Vl mKIAA1514 90 rLTIaNPTVSDA---GYYECEAMlrsssVAPVTR--GAYLSVL 127 IGc2: domain 2 of 4, from 143 to 209: score 44.5, E = 1.4e-08 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti ++ V ++C+a g p p+ItW+k+ ++ ++ ++ +++s++ L+i mKIAA1514 143 EMEKVVDIPCRAKGVPPPSITWYKdAALVEvgkltrfkqrSDGGLQI 189 knvsleDsGlYtCvArNsvg<-* + ++D G+ +C+A N++g mKIAA1514 190 SGLLPDDTGMLQCFAHNAAG 209 IG: domain 2 of 4, from 137 to 220: score 39.1, E = 6e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. +++t+ v ++C+a++ ++++itWy++ ++ ++ ++++ mKIAA1514 137 ERhITAEMEKVVDIPCrAKgvpppSITWYkdaalvevgkltrfkqrs 183 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++L+I+++ p+D+ G +C a++ +g+a+ +t+L V+ mKIAA1514 184 dggLQIsGLLPDDT---GMLQCFAHnaAGEAQT--STYLAVT 220 IGc2: domain 3 of 4, from 236 to 304: score 54.0, E = 1.9e-11 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL + G sV+L C+ sg+p p ItW k++ l++++ + ++ + +++L mKIAA1514 236 IDGMSVVLACETSGAPRPAITWQKgERILAsgsvqlprftllESGSL 282 tiknvsleDsGlYtCvArNsvg<-* i++ +D+G+YtC+A+Ns g mKIAA1514 283 LISPTHISDAGTYTCLATNSRG 304 IG: domain 3 of 4, from 230 to 315: score 42.8, E = 4.6e-08 *->pp.vtvkeGesvtLtC.as.....titWy.................. p + tv G sv+L C+ s+ + + itW ++ + +++ + ++ + mKIAA1514 230 PLdSTVIDGMSVVLACeTSgaprpAITWQkgerilasgsvqlprftl 276 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++L I++ +D+ GtYtC at++ g++++ ++ L V mKIAA1514 277 lesgsLLIsPTHISDA---GTYTCLATnsRGVDEA--SADLVVW 315 IGc2: domain 4 of 4, from 330 to 398: score 22.1, E = 0.027 *->leGqsVtLtCpasgdpvpnIt..Wlk.gkplp..........sgstL + G+++++ C+++ dp +++ W k+g l+ +++++ + + +++L mKIAA1514 330 IKGTQASMVCGVTHDPRVTVRyvWEKdGATLAvetnprirldRNGSL 376 tiknvsleDsGlYtCvArNsvg<-* +i+ +D G+YtC++ ++ g mKIAA1514 377 HISQTWSGDIGTYTCRVLSAGG 398 IG: domain 4 of 4, from 324 to 409: score 33.6, E = 2.6e-05 *->pp.vtvkeGesvtLtC.as.......titWy................ p++++v G +++ C++++++ + ++ W +++ + ++++ + mKIAA1514 324 PQdQSVIKGTQASMVCgVThdprvtvRYVWEkdgatlavetnprirl 370 .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++++L+I++ D GtYtC++ + +g++s +++L+V+ mKIAA1514 371 drngsLHIsQTWSGDI---GTYTCRVLsaGGNDSR--NAHLRVR 409 FN3: domain 1 of 13, from 412 to 496: score 39.5, E = 4.5e-07 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... P +P++ +++t t ++ ++l+W +P +++++ +Y+ + mKIAA1514 412 PHAPEH---PVATLSTVERR----AINLTWAKPfdgnspLMRYVlem 451 ....................ytltgLkPgaepwteYefrVrAvngndaGe ++++ +++ +++++ +++ ++gL+P Y+fr+ Avn+ +G mKIAA1514 452 sennapwtillasvdpeatsVMVKGLVPA----RSYQFRLCAVND--VGK 495 g<-* g mKIAA1514 496 G 496 FN3: domain 2 of 13, from 512 to 598: score 45.8, E = 5.8e-09 *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv P +P+ + + ++ t+ s+ ++W+pP++++ ++ +++i+ mKIAA1514 512 PTAPPQN--VIASGRTNQ------SIMIQWQPPpeshqngilkgyII 550 gYr....................ytltgLkPgaepwteYefrVrAvngnd +Y + +++ + ++ ++ ++++ l++L + t+Ye+ V+A+n+ mKIAA1514 551 RYClaglpvgyqfknitdadvnnLLLEDLIIW----TNYEIEVAAYNS-- 594 aGeg<-* aG g mKIAA1514 595 AGLG 598 [output cut off at A = 10 top alignments] //