hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbf/mbf03631/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1514 ( 1994 res) mbf03631 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- fn3 Fibronectin type III domain 695.7 2.2e-205 13 I-set Immunoglobulin I-set domain 160.8 2.4e-44 4 ig Immunoglobulin domain 131.3 1.8e-35 4 V-set Immunoglobulin V-set domain 37.6 2.8e-07 4 C2-set_2 CD80-like C2-set immunoglobulin domain 1.7 0.41 1 C1-set Immunoglobulin C1-set domain -14.8 0.87 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ig 1/4 52 108 .. 1 65 [] 28.8 0.00013 V-set 1/4 36 127 .. 1 130 [] 1.9 0.39 I-set 1/4 37 127 .. 1 97 [] 14.1 0.0009 ig 2/4 145 204 .. 1 65 [] 35.3 1.4e-06 C2-set_2 1/1 131 213 .. 1 101 [] 1.7 0.41 V-set 2/4 130 220 .. 1 130 [] 18.9 0.0079 I-set 2/4 130 220 .. 1 97 [] 51.7 1.6e-11 ig 3/4 238 299 .. 1 65 [] 37.1 4.1e-07 V-set 3/4 224 315 .. 1 130 [] 4.1 0.24 I-set 3/4 224 315 .. 1 97 [] 68.9 1.1e-16 ig 4/4 332 393 .. 1 65 [] 29.9 5.9e-05 C1-set 1/1 321 403 .. 1 92 [] -14.8 0.87 V-set 4/4 317 409 .. 1 130 [] 12.7 0.033 I-set 4/4 318 409 .. 1 97 [] 26.1 9.6e-05 fn3 1/13 412 499 .. 1 84 [] 49.7 6.4e-11 fn3 2/13 512 601 .. 1 84 [] 60.2 4.5e-14 fn3 3/13 613 705 .. 1 84 [] 35.1 1.6e-06 fn3 4/13 717 802 .. 1 84 [] 62.1 1.2e-14 fn3 5/13 815 905 .. 1 84 [] 38.5 1.5e-07 fn3 6/13 918 1009 .. 1 84 [] 64.8 1.8e-15 fn3 7/13 1021 1110 .. 1 84 [] 70.0 5.1e-17 fn3 8/13 1123 1209 .. 1 84 [] 55.4 1.2e-12 fn3 9/13 1225 1310 .. 1 84 [] 61.0 2.6e-14 fn3 10/13 1323 1433 .. 1 84 [] 55.5 1.1e-12 fn3 11/13 1445 1534 .. 1 84 [] 72.5 8.9e-18 fn3 12/13 1546 1634 .. 1 84 [] 60.3 4.2e-14 fn3 13/13 1647 1734 .. 1 84 [] 56.9 4.5e-13 Alignments of top-scoring domains: ig: domain 1 of 4, from 52 to 108: score 28.8, E = 0.00013 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq + vt+ C + ++ W+++g +l +g + + + mKIAA1514 52 TSEVTMECVANARPLIKLHIVWKKDGApLSsGISDYNRR-------- 90 tsLtitnvtpeDggtYtCvv<-* Lti n t +D+g+Y C++ mKIAA1514 91 --LTIANPTVSDAGYYECEA 108 V-set: domain 1 of 4, from 36 to 127: score 1.9, E = 0.39 *->qstvtqepprLLLASLfWptsvtvaeGgs.vtLpCtysGtfddssss + t+ pp+ +v+ G+s+vt+ C mKIAA1514 36 APTIII-PPK----------NTSVVAGTSeVTMECVAN--------- 62 sgtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsg +p +i ++ + ++ + + +++ ++ mKIAA1514 63 -----------ARP------LI-KLHIVWKKD------GAPLSSGIS--- 85 npskgdfsLtIsnlqlsDsGtYyCa...........gggtrLtVl<-* +++ LtI n ++sD G Y C ++++ + g L Vl mKIAA1514 86 ---DYNRRLTIANPTVSDAGYYECEamlrsssvapvTRGAYLSVL 127 I-set: domain 1 of 4, from 37 to 127: score 14.1, E = 0.0009 *->PkFtqkpkdveVqeGes.arfeCkVtGtP..ePtVsWfKdGqplssv P+++++pk+ V G s++++eC + P + + W+KdG plss mKIAA1514 37 PTIIIPPKNTSVVAGTSeVTMECVANARPliKLHIVWKKDGAPLSS- 82 llpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvA...tNsaGeaeas +y+ +LtI n + +D+G Y C A ++ s+ ++ mKIAA1514 83 ------GISDYNR-----RLTIANPTVSDAGYYECEAmlrSSSVAPVTRG 121 aeLtVq<-* a L V mKIAA1514 122 AYLSVL 127 ig: domain 2 of 4, from 145 to 204: score 35.3, E = 1.4e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++ v ++C+++ g p++++tW+++ ++ g l+++ ++++++ mKIAA1514 145 EKVVDIPCRAK--GVPPPSITWYKDAAlVEvGKLTRFKQRSDGG--- 186 tsLtitnvtpeDggtYtCvv<-* L+i+ + p+D+g C + mKIAA1514 187 --LQISGLLPDDTGMLQCFA 204 C2-set_2: domain 1 of 1, from 131 to 213: score 1.7, E = 0.41 *->peIeppasllegeksenlevvatCvlpysagGkPapritWyldgkel ++ p+ +++e +++v C a G P+p+itWy+d + mKIAA1514 131 QFVREPERHITAE--MEKVVDIPCR----AKGVPPPSITWYKDAALV 171 vpeekteaittsseqdpesglytvtStLklvpsredhgqsltCqvsygal +++ t +q+++ gl + l p + l C +++ a+ mKIAA1514 172 -----EVGKLTRFKQRSDGGLQIS----GLLPD---DTGMLQCFAHNAAG 209 rgsk<-* + + mKIAA1514 210 EAQT 213 V-set: domain 2 of 4, from 130 to 220: score 18.9, E = 0.0079 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss ++ v + p+r ++t++ + v +pC + + mKIAA1514 130 PQFVRE-PER----------HITAEMEKVVDIPCRAK----GV---- 157 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn + s++Wy+ + + + + rfk r mKIAA1514 158 PPPSITWYK-DAA--------------LVEV----GKLTRFKQRSD---- 184 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* ++ L+Is l ++D+G+ C ++ ++ +++t L V+ mKIAA1514 185 GG-----LQISGLLPDDTGMLQCFahnaageaQTSTYLAVT 220 I-set: domain 2 of 4, from 130 to 220: score 51.7, E = 1.6e-11 *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvl. P+F+++p++ +++ + ++ C+++G P+P+++W+Kd + + + mKIAA1514 130 PQFVREPeRHITAEMEKVVDIPCRAKGVPPPSITWYKDAALVEV-Gk 175 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt l rfk + dg L Is+ pdD G C A N aGea++s L mKIAA1514 176 LT--RFKQRSDG-----GLQISGLLPDDTGMLQCFAHNAAGEAQTSTYLA 218 Vq<-* V+ mKIAA1514 219 VT 220 ig: domain 3 of 4, from 238 to 299: score 37.1, E = 4.1e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G sv L C++ +g p + +tW+++ l +g ++ + s + mKIAA1514 238 GMSVVLACET--SGAPRPAITWQKGERiLAsGSVQLPRFTLLESGS- 281 tsLtitnvtpeDggtYtCvv<-* L i+++ +D+gtYtC + mKIAA1514 282 --LLISPTHISDAGTYTCLA 299 V-set: domain 3 of 4, from 224 to 315: score 4.1, E = 0.24 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss + + p tv G sv L C s + + mKIAA1514 224 PNITRG--PL----------DSTVIDGMSVVLACETS---GAP---- 251 gtgsvyWyrq.qppGekpeliiisyytyysysegngtvserfkgrvrfsg ++ ++W ++++ ++++ +++ r+++ mKIAA1514 252 RP-AITWQKGeRILASGSVQLP----------------------RFTLLE 278 npskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* ++s L Is + sD GtY+C +++++ ++ + L+V mKIAA1514 279 SGS-----LLISPTHISDAGTYTCLatnsrgvdEASADLVVW 315 I-set: domain 3 of 4, from 224 to 315: score 68.9, E = 1.1e-16 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssv.l. P +t+ p d +V G s+++ C+ +G P P ++W K+ + l s + + mKIAA1514 224 PNITRGPLDSTVIDGMSVVLACETSGAPRPAITWQKGERILASGsVq 270 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt lp rf ++g +L Is ++D+G+YtC AtNs G +easa L mKIAA1514 271 LP--RFTLLESG-----SLLISPTHISDAGTYTCLATNSRGVDEASADLV 313 Vq<-* V mKIAA1514 314 VW 315 ig: domain 4 of 4, from 332 to 393: score 29.9, E = 5.9e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G ++++C v++ + v++ W ++g +l ++ ++ ++++s mKIAA1514 332 GTQASMVCGVTHDPRVTVRYVWEKDGAtLAvETNPRIRLDRNGS--- 375 tsLtitnvtpeDggtYtCvv<-* L+i+++ ++D gtYtC+v mKIAA1514 376 --LHISQTWSGDIGTYTCRV 393 C1-set: domain 1 of 1, from 321 to 403: score -14.8, E = 0.87 *->ppgspepel...gkpntLvClVtgFyPpdItVt..WlkNGqevtegv ++ +p +++ +g +++ vC Vt + p +tV+ W k+G +v mKIAA1514 321 TK-PPQDQSvikGTQASMVCGVT--HDPRVTVRyvWEKDGAT--LAV 362 esteplpkngDgtYqlsSyLtftasepesgd..sYtCrVeHesLkveneP e+++ +++ +g+ ++s t + sgd ++YtCrV ++ + mKIAA1514 363 ETNPRIRLDRNGSLHISQ----T---W-SGDigTYTCRVLSAGGN---DS 401 lt<-* mKIAA1514 402 RN 403 V-set: domain 4 of 4, from 317 to 409: score 12.7, E = 0.033 *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss +t pp +v G+ +++ C ++ mKIAA1514 317 RTRITK-PPQ----------DQSVIKGTQASMVCGVT---------- 342 gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn ++p ++ ++y+ ++++ t + + r+r+ +n mKIAA1514 343 ----------HDP---------RVTVRYVWEKDGATLAVETNPRIRLDRN 373 pskgdfsLtIsnlqlsDsGtYyCa........gggtrLtVl<-* +s L+Is+ + D GtY+C + ++++ +L V+ mKIAA1514 374 GS-----LHISQTWSGDIGTYTCRvlsaggndSRNAHLRVR 409 I-set: domain 4 of 4, from 318 to 409: score 26.1, E = 9.6e-05 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtV..sWfKdGqplssvl ++t++p+d+ V G a++ C Vt +P tV+ W KdG l + mKIAA1514 318 TRITKPPQDQSVIKGTQASMVCGVTHDPRVTVryVWEKDGATLAV-- 362 lpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLt +r++ + +g +L Is+ ++D G+YtC++ +G ++ a+L mKIAA1514 363 ETNPRIRLDRNG-----SLHISQTWSGDIGTYTCRVLSAGGNDSRNAHLR 407 Vq<-* V+ mKIAA1514 408 VR 409 fn3: domain 1 of 13, from 412 to 499: score 49.7, E = 6.4e-11 *->PsaPtnltvtdv..tstsltlsWsppt.gngpitgYevtyRqpkngg P aP+ +++t + + l+W +p++gn+p+ +Y ++ ++ n + mKIAA1514 412 PHAPEHPVATLStvERRAINLTWAKPFdGNSPLMRYVLEM-SENNAP 457 e.wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* ++ +v++ +ts++++gL+P + Y++r+ Avn++G+G++S mKIAA1514 458 WtILLASVDPEATSVMVKGLVPARSYQFRLCAVNDVGkGQFS 499 fn3: domain 2 of 13, from 512 to 601: score 60.2, E = 4.5e-14 *->P.saPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng P+ +P+n+ ++++t+ s+ ++W+pp++++ ng + gY ++y + ++ mKIAA1514 512 PtAPPQNVIASGRTNQSIMIQWQPPPeshQNGILKGYIIRY-CLAGL 557 ge..wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* + + + + + + ++ l++L t+Ye+ V+A+n +G G +S mKIAA1514 558 PVgyQFKNITDADVNNLLLEDLIIWTNYEIEVAAYNSAGlGVYS 601 fn3: domain 3 of 13, from 613 to 705: score 35.1, E = 1.6e-06 *->P.saPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng P+ +P+n+++++++st+++++W++p+++ ng +gY++ ++ mKIAA1514 613 PtVPPGNVHAEATNSTTIRFTWNAPSpqfINGINQGYKLIA-WEPAQ 658 gewneltvpgt.....ttsytltgLkPgteYevrVqAvnggG.GpeS<-* +e+++ +++ +++ + ++gLk teY +V ++ G+Gp+S mKIAA1514 659 EEEVTMVTARPnfqdsIHVGFVSGLKKFTEYFTSVLCFTTPGdGPRS 705 fn3: domain 4 of 13, from 717 to 802: score 62.1, E = 1.2e-14 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpknggew P++++ l++ d+ +tsl +sW+ p + ng +tgY++++ ++ n + mKIAA1514 717 PGPVGHLSFNDILDTSLKVSWQEPGeKNGILTGYRISW-EEYNRTNT 762 nelt.vpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* + +p++t +y +tgL++ t+Y++ V+A + +G+G+ S mKIAA1514 763 RVTHyLPNVTLEYRVTGLTALTTYTIEVAAMTSKGqGQVS 802 fn3: domain 5 of 13, from 815 to 905: score 38.5, E = 1.5e-07 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge. P+aPtnl ++++++ s+tl+ p +g i++ v+ q ge+ mKIAA1514 815 PGAPTNLGISNIGPRSVTLQFRPGYdGKTSISRWVVEA-QVGVIGEg 860 ....wnelt.vpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* ++ + + ++++s+++ +L+P t Y++r + vn +G++p+S mKIAA1514 861 eewlLIYQLgNEPDARSMEVPDLNPFTYYSFRMRQVNIVGtSPPS 905 fn3: domain 6 of 13, from 918 to 1009: score 64.8, E = 1.8e-15 *->P.saPtnltvtdvtstsltlsWsppt.....gngpitgYevtyRqpk P+ aP n+t + ++tsl l+W p ++ + +gn + gY+++y + mKIAA1514 918 PdIAPANVTLRTASETSLWLRWMPLPemeynGNPESVGYKIKY-GRS 963 ngge..wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* +g +++ + ++++++yt+++L++ teY v+VqA n++G+Gp+S mKIAA1514 964 DGHGktLSHTVQDRVEREYTIEDLEEWTEYRVQVQAFNAIGsGPWS 1009 fn3: domain 7 of 13, from 1021 to 1110: score 70.0, E = 5.1e-17 *->P.saPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng P+s Ptn+++ ++ts+s+ ++Ws ++ + ng + gY+v+y ++k++ mKIAA1514 1021 PsSGPTNVSALATTSSSMLVRWSEIPeadRNGLVLGYKVRY-KEKDS 1066 ge..wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* +++ ++l ++++s++ltgL ++ Yev+V A +++G+G +S mKIAA1514 1067 DSqpRFWLVEGNSSRSAQLTGLGKYVLYEVQVLAFTRIGdGSPS 1110 fn3: domain 8 of 13, from 1123 to 1209: score 55.4, E = 1.2e-12 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge. P++P ++ + +v++ts++l W+pp +ng i Y++t R ++ + + mKIAA1514 1123 PGPPMGILFPEVRTTSVRLIWQPPAaPNGIILAYQITHRLNATTANt 1169 wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* + + +++++y+ tgLkP + Y +r++A++++G G+ mKIAA1514 1170 ATVEVLAPSARQYMATGLKPESVYLFRITAQTRKGwGEAA 1209 fn3: domain 9 of 13, from 1225 to 1310: score 61.0, E = 2.6e-14 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge. Ps+P ++ +dv + s+ lsW+p ++g +p+ +Y+++ R + +g mKIAA1514 1225 PSKPV-VQQEDVKARSVLLSWEPGSdGLSPVRYYTIQTR-ELPSGRw 1269 .wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* ++ +v+ +++ +t+ LkP t Y++rV+A n++G++++S mKIAA1514 1270 aLHSASVSHNASAFTVDRLKPFTSYKFRVKATNDIGdSEFS 1310 fn3: domain 10 of 13, from 1323 to 1433: score 55.5, E = 1.1e-12 *->P.saPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng P+ aPt l+vt+ t+ts+ ++W+pp++++ ng + g++++yR+ + mKIAA1514 1323 PdEAPTILSVTPHTTTSVLIRWQPPSedkINGILLGFRIRYRELLYD 1369 ge..............wnelt........vpgtttsytltgLkPgteYev g ++ + ++ ++++ +w elt+ + ++ ++ t+y+l +L +++Ye+ mKIAA1514 1370 GLrgftlrginnpgakWAELTslysmrnlTRPSLTQYELDNLSKHRRYEI 1419 rVqAvnggG.GpeS<-* r +n++G+Gp S mKIAA1514 1420 RMSIYNAVGeGPLS 1433 fn3: domain 11 of 13, from 1445 to 1534: score 72.5, E = 8.9e-18 *->P.saPtnltvtdvtstsltlsWsppt...gngpitgYevtyRqpkng P+ aP+n+ + + t+t l ++W+pp+ ++ ng+i+gY++ +++ mKIAA1514 1445 PtAAPQNVAIHSATATQLDVTWEPPPldnQNGDIQGYKIYF-WEVQR 1490 ge..wneltvpgtttsytltgLkPgteYevrVqAvnggG.GpeS<-* +++ +t+ ++s+ l++L+ +t Y v+V+A n++G+Gp+S mKIAA1514 1491 RNltERVKTLFLAENSVKLKNLTGYTAYMVSVAAFNAAGdGPRS 1534 fn3: domain 12 of 13, from 1546 to 1634: score 60.3, E = 4.2e-14 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyR..qpkngg PsaP+ ++++++t+ts+ +sW++p +ngp++gY++ y + p++g mKIAA1514 1546 PSAPGSVKFSELTTTSVNVSWDAPQfPNGPLEGYRLVYEpcTPVDGV 1592 e.wneltvpgttt.sytltgLkPgteYevrVqAvnggGGpeS<-* ++ ++++v+g++ +++L +g++Y +r++A + +Gpe mKIAA1514 1593 SkIVTVDVKGNSPlWLKVKDLAEGMTYRFRIKAKTFTYGPEI 1634 fn3: domain 13 of 13, from 1647 to 1734: score 56.9, E = 4.5e-13 *->PsaPtnltvtdvtstsltlsWsppt.gngpitgYevtyRqpkngge. P++P+ + ++ + s+ + ++Ws ++g gpit+Y ++ R p+++g mKIAA1514 1647 PGPPG-VPIIVRYSSAIAIHWSSGDpGKGPITRYVIEAR-PSDEGLw 1691 .wneltvpgtttsytltg..LkPgteYevrVqAvnggG.GpeS<-* + +++p+ tsyt++ + LkPg+ Y +rV+Avn+ G G +S mKIAA1514 1692 dILIKDIPKEVTSYTFSMdiLKPGVSYDFRVIAVNDYGfGTPS 1734 //