hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06025/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1513  ( 621 res)   mbg06025

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
KRAB     krueppel associated box                         79.7    3.5e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      61   121 ..     1    62 []    79.7  3.5e-19

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 61 to 121: score 79.7, E = 3.5e-19
                   *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk
                        F+ VA++Fs EEWe L   Q++LYR+VM+ NY+++ SL+ f+++k
   mKIAA1513    61    ALFDEVAIYFSDEEWEVLTEQQKALYREVMRMNYETVLSLE-FPFPK 106  

                   pdliskLEqgeEpwi<-*
                   pd+i +LE+ eE  +   
   mKIAA1513   107 PDMINRLERDEECPN    121  

//