hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06025/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1513  ( 621 res)   mbg06025

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DDE      DDE superfamily endonuclease                   277.5    1.8e-79   1
KRAB     KRAB box                                        61.1    2.5e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KRAB       1/1      61   101 ..     1    41 []    61.1  2.5e-14
DDE        1/1     369   581 ..     1   240 []   277.5  1.8e-79

Alignments of top-scoring domains:
KRAB: domain 1 of 1, from 61 to 101: score 61.1, E = 2.5e-14
                   *->VtFeDVAVdFtqEEWglLdpaQrnLYrdVMlENyrnLvSlg<-*
                        F+ VA++F+ EEW+ L + Q++LYr+VM+ Ny++++Sl+   
   mKIAA1513    61    ALFDEVAIYFSDEEWEVLTEQQKALYREVMRMNYETVLSLE    101  

DDE: domain 1 of 1, from 369 to 581: score 277.5, E = 1.8e-79
                   *->ippediFNaDETGlfwgllpngtVvgssekegrrvpgkkrglkrrlT
                      ++ +++ NaDET++++++++  +V+++++ e+  ++++++++k r+T
   mKIAA1513   369    YEVAQMGNADETPICLEVPS--RVTVDNQGEKPILVKTPGREKLRIT 413  

                   vlicanaaGgekLpPlvIgKgknprsfkfYlaekkikplpveyranknaW
                   ++++ ++a+g+kLpP++I++g+++  +kf        p+++e+r+++++W
   mKIAA1513   414 AMLG-VLADGRKLPPYIILRGTYIPPGKF--------PSGMEIRCHRYGW 454  

                   mTseifeeWLekvFdprmkleylrpktegrkvLLlLDghgaHprtdefVr
                   mT++++++WLe+v+ +r+       + + ++ +L+L+g+++H+ td+   
   mKIAA1513   455 MTEDLMQDWLEVVWRRRTG------AVPRQRGMLILNGFRCHA-TDSV-- 495  

                   katcelnnIillflPahstsllQPlDqGvfsplKraYRrkllkkilagie
                   k+++e +n++++++P+++ts+lQ lD+ v++pl++++R+++++++lag+ 
   mKIAA1513   496 KSSMENMNTDMVIIPGGLTSQLQVLDVVVYKPLNDSVRAQYSNWLLAGNL 545  

                   slskeqkskltnpqktlnlldaiswiakAWnkavkketIvsgW<-*
                    ls+      t+++k+++l  +++wi++AWn ++++e Iv+g+   
   mKIAA1513   546 ALSP------TGNAKKPPLGLFLEWIMVAWN-SISSESIVQGF    581  

//