hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg03448/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1511  ( 1207 res)   mbg03448

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SWIM     SWIM zinc finger                                19.0      0.021   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SWIM       1/1     241   278 ..     1    37 []    19.0    0.021

Alignments of top-scoring domains:
SWIM: domain 1 of 1, from 241 to 278: score 19.0, E = 0.021
                   *->yrVqldld...lvkasCsCpdfqlygipCkHalAvllalg<-*
                      y V +++d+ ++   sC C++  ++ ++C H++A+ l+++   
   mKIAA1511   241    YKVAISFDrckITSVSCGCGN--KDIFYCAHVVALSLYRI    278  

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