hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg19167/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1506  ( 1520 res)   mbg19167

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET domain                                     163.5    3.6e-45   1
FYRC     F/Y rich C-terminus                            129.7    5.4e-35   1
FYRN     F/Y-rich N-terminus                             77.4      3e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FYRN       1/1    1163  1216 ..     1    55 []    77.4    3e-19
FYRC       1/1    1219  1306 ..     1    96 []   129.7  5.4e-35
SET        1/1    1374  1502 ..     1   261 []   163.5  3.6e-45

Alignments of top-scoring domains:
FYRN: domain 1 of 1, from 1163 to 1216: score 77.4, E = 3e-19
                   *->igaltvvkLGvIvpdnsksfhnenaIyPiGYksrrkylSvldptnlt
                      +g+l ++++G+++p++++ fh+ +a++P+GY+++r+y+S++ +++++
   mKIAA1506  1163    VGSLIFHTIGQLLPQQMQAFHSPKALFPVGYEASRLYWSTRYANRRC 1209 

                   lYtcevLd<-*
                    Y c++ +   
   mKIAA1506  1210 RYLCSI-E    1216 

FYRC: domain 1 of 1, from 1219 to 1306: score 129.7, E = 5.4e-35
                   *->slaPlFvicsedqgdpgevfkgvSasacWekilerVqearkkacasl
                      +++P+Fvi+  +qg+++ v +++S++++W kile+V+++rkk+  ++
   mKIAA1506  1219    DGRPVFVIRIVEQGHEDLVLSDSSPKDVWDKILEPVACVRKKS--EM 1263 

                   lplklgfpesisGedmFGLsapaVqkliEsLPGaesCtnYrtlkfryss<
                   l+l   fp++++Ged+FGL+  aV +++EsLPG+e C+nY   +fry++ 
   mKIAA1506  1264 LQL---FPAYLKGEDLFGLTVSAVARIAESLPGVEACENY---TFRYGR  1306 

                   -*
                     
   mKIAA1506     -    -    

SET: domain 1 of 1, from 1374 to 1502: score 163.5, E = 3.6e-45
                   *->vqkgrwarlegfktegkGwGlratedIpkGefiiEYpGelitseeae
                      +  +++  + ++++++ G+Gl+a++dI+k +++iEY+G +i++e a+
   mKIAA1506  1374    MKTEWKSNVYLARSRIQGLGLYAARDIEKHTMVIEYIGTIIRNEVAN 1420 

                   kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPtys
                   ++e      k+y+ ++++ +  Y+f+ d+                     
   mKIAA1506  1421 RKE------KLYESQNRG-V--YMFRMDN--------------------- 1440 

                   PlfWseeeleLkGTqllevdkeeleeydllaeeievflqhklFpdveeef
                                                                     
   mKIAA1506     - -------------------------------------------------- -    

                   sfedflWaasivsSRafslvegvnreeensegslelviDAtrkGNiaRFi
                                                     ++viDAt  G+ aR+i
   mKIAA1506  1441 ----------------------------------DHVIDATLTGGPARYI 1456 

                   NHSCePNcevqvvfvdgedlgdsdvtDeaglepgdprivlfAlrdIpaGe
                   NHSC PNc+++vv+ +                 + ++i++ + r I++Ge
   mKIAA1506  1457 NHSCAPNCVAEVVTFE-----------------RGHKIIISSNRRIQKGE 1489 

                   ELtydYgydksnge<-*
                   EL+ydY+ ++++++   
   mKIAA1506  1490 ELCYDYK-FDFEDD    1502 

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