hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbf/mbf00247/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1500  ( 1728 res)   mbf00247

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
Calx-beta Calx-beta domain                              243.2    3.6e-69   5

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Calx-beta   1/5     263   366 ..     1   109 []    63.6  4.3e-15
Calx-beta   2/5     379   490 ..     1   109 []    42.4    1e-08
Calx-beta   3/5     504   610 ..     1   109 []    42.5  9.6e-09
Calx-beta   4/5     625   727 ..     1   109 []    15.8   0.0008
Calx-beta   5/5     745   849 ..     1   109 []    79.3    8e-20

Alignments of top-scoring domains:
Calx-beta: domain 1 of 5, from 263 to 366: score 63.6, E = 4.3e-15
                   *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
                      +  ++++    + ++F  t y+V   E  G+v v+V r+g+   l+ 
   mKIAA1500   263    VSDNVFHI-QWSLISFKYTSYNV--SEKAGSVSVTVQRTGN---LNQ 303  

                   tVtVsyrTeDGTAtaG..Pg.sDYeptegtiLtFgPgedtekcinvtiiD
                   + +V  rTe GTA+  ++Pg++DY   +g+ ++F+ ge + k   v i+D
   mKIAA1500   304 YAIVLCRTEQGTASSSshPGqQDYMEYAGQ-VQFDEGE-STKSCTVIIND 351  

                   DdvyEgdEnFfvrLs<-*
                   Ddv+E+ E F+v Ls   
   mKIAA1500   352 DDVFENIESFTVGLS    366  

Calx-beta: domain 2 of 5, from 379 to 490: score 42.4, E = 1e-08
                   *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
                      a v+I D  d+++++F+  +y+V  +E+ G+    + r g+    ++
   mKIAA1500   379    AKVIINDTEDEPTLEFDKKTYRV--NESAGFLFAPIKRQGD---SSS 420  

                   tVtVsyrTeDGTAtaG.P.....gsDYep..tegt.iLtFgPgedtekci
                   tV+    T+  +A++ ++   ++gsD+ +++ ++++ ++FgPg+ t+ + 
   mKIAA1500   421 TVSAVCYTVPKSAMGSsLyalesGSDFKSrgRSAEsRVIFGPGV-TVSTC 469  

                   nvtiiDDdvyEgdEnFfvrLs<-*
                   +v +iDD++yE+ E F + L+   
   mKIAA1500   470 DVMVIDDSEYEEEEEFEIALA    490  

Calx-beta: domain 3 of 5, from 504 to 610: score 42.5, E = 9.6e-09
                   *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
                      a v I+ ++da++v++ +t +++   E+ G+v + V+r+g   +l++
   mKIAA1500   504    AKVLISGPNDASTVSLGNTAFTI--SEDAGTVKIPVIRHGT--DLST 546  

                   tVtVsyrT..eD.GTAtaGPgsDYeptegtiLtFgPgedtekcinvtiiD
                     +V   T++ D+ +At G  +DY+p +   + FgPg  te+   +ti+D
   mKIAA1500   547 FTSVWCATrpSDpASATPG--VDYVPSSRK-VEFGPGI-TEQYCTLTILD 592  

                   Ddvy...EgdEnFfvrLs<-*
                   D  y+  Eg E+F+v Ls   
   mKIAA1500   593 DTQYpviEGLETFVVFLS    610  

Calx-beta: domain 4 of 5, from 625 to 727: score 15.8, E = 0.0008
                   *->atvtIlDdddagvvgFeptvyqVsVlEndGevevcVvrmggapelrr
                      +++++    d+++++F+     V  +E  G+  + ++r g+   l+ 
   mKIAA1500   625    IAINDTFQ-DVPSMQFSKDLLLV--KEKEGVLHIPIIRSGD---LSY 665  

                   tVtVsyrTeDGTAtaGPgsDYept..egt.iLtFgPgedtekcinvtiiD
                   + +V   T+  +A+     D+e  +++ ++ +tF  g+ + k   v i D
   mKIAA1500   666 ESSVRCYTQGHSAQVM--EDFEERrnADSsRITFLKGQ-KTKNCTVYIHD 712  

                   DdvyEgdEnFfvrLs<-*
                   D+++E+ E+F v L+   
   mKIAA1500   713 DSMFEPEEQFRVYLG    727  

Calx-beta: domain 5 of 5, from 745 to 849: score 79.3, E = 8e-20
                   *->atvtIlDdddagvvgFeptvyqVsVl....EndGevevcVvrmggap
                      atvtI+ d da++++Fe++ yqV+ ++ ++E++++  ++V+r+g+  
   mKIAA1500   745    ATVTISNDEDAPTIEFEEAAYQVR-EpagpEAIAVLSIKVIRRGD-- 788  

                   elrrtVtVsyrTeDGTAtaGPgsDYeptegtiLtFgPgedtekcinvtii
                     +rt  +  +T DG+A+ G  +DY p++ + L F+Pg+ ++++++v+i+
   mKIAA1500   789 -QNRTSKIRCSTRDGSAQSG--VDYYPKSRV-LKFSPGV-DHIFFKVEIL 833  

                   DDdvyEgdEnFfvrLs<-*
                     +  E +E F+++L+   
   mKIAA1500   834 SNEDREWHESFSLVLG    849  

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